Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21685 and RR42_RS21690 are separated by 49 nucleotides RR42_RS21690 and RR42_RS21695 are separated by 14 nucleotides RR42_RS21695 and RR42_RS21700 are separated by 529 nucleotides
RR42_RS21685: RR42_RS21685 - hypothetical protein, at 192,839 to 193,855
_RS21685
RR42_RS21690: RR42_RS21690 - acetyltransferase, at 193,905 to 194,432
_RS21690
RR42_RS21695: RR42_RS21695 - DNA-binding protein, at 194,447 to 195,034
_RS21695
RR42_RS21700: RR42_RS21700 - membrane protein, at 195,564 to 197,135
_RS21700
Position (kb) 194
195
196 Strain fitness (log2 ratio) -1
0
1
2 at 193.918 kb on + strand at 194.005 kb on + strand, within RR42_RS21690 at 194.421 kb on - strand at 194.500 kb on - strand at 194.530 kb on - strand, within RR42_RS21695 at 194.607 kb on + strand, within RR42_RS21695 at 194.754 kb on + strand, within RR42_RS21695 at 194.754 kb on + strand, within RR42_RS21695 at 194.755 kb on - strand, within RR42_RS21695 at 195.291 kb on + strand at 195.291 kb on + strand at 195.291 kb on + strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.293 kb on + strand at 195.293 kb on + strand at 195.478 kb on - strand at 196.014 kb on - strand, within RR42_RS21700
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 193,918 + -0.7 194,005 + RR42_RS21690 0.19 -0.2 194,421 - -0.7 194,500 - +0.3 194,530 - RR42_RS21695 0.14 -0.1 194,607 + RR42_RS21695 0.27 +0.6 194,754 + RR42_RS21695 0.52 +2.2 194,754 + RR42_RS21695 0.52 -0.8 194,755 - RR42_RS21695 0.52 +0.5 195,291 + +1.4 195,291 + +0.2 195,291 + +2.6 195,292 - -0.4 195,292 - -0.5 195,293 + -0.6 195,293 + -0.0 195,478 - +0.5 196,014 - RR42_RS21700 0.29 +0.2
Or see this region's nucleotide sequence