Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20950 and RR42_RS20955 are separated by 359 nucleotides RR42_RS20955 and RR42_RS20960 are separated by 889 nucleotides
RR42_RS20950: RR42_RS20950 - multidrug MFS transporter, at 26,794 to 27,888
_RS20950
RR42_RS20955: RR42_RS20955 - LuxR family transcriptional regulator, at 28,248 to 29,189
_RS20955
RR42_RS20960: RR42_RS20960 - SAM-dependent methyltransferase, at 30,079 to 30,891
_RS20960
Position (kb) 28
29
30 Strain fitness (log2 ratio) -1
0
1 at 27.383 kb on + strand, within RR42_RS20950 at 27.383 kb on + strand, within RR42_RS20950 at 27.384 kb on - strand, within RR42_RS20950 at 27.384 kb on - strand, within RR42_RS20950 at 27.551 kb on + strand, within RR42_RS20950 at 27.551 kb on + strand, within RR42_RS20950 at 27.552 kb on - strand, within RR42_RS20950 at 27.687 kb on - strand, within RR42_RS20950 at 28.031 kb on + strand at 28.032 kb on - strand at 28.208 kb on + strand at 28.208 kb on + strand at 28.209 kb on - strand at 28.209 kb on - strand at 28.209 kb on - strand at 28.297 kb on - strand at 28.423 kb on - strand, within RR42_RS20955 at 28.438 kb on + strand, within RR42_RS20955 at 28.438 kb on + strand, within RR42_RS20955 at 28.439 kb on - strand, within RR42_RS20955 at 28.478 kb on + strand, within RR42_RS20955 at 28.488 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.756 kb on + strand, within RR42_RS20955 at 28.828 kb on + strand, within RR42_RS20955 at 28.829 kb on - strand, within RR42_RS20955 at 28.829 kb on - strand, within RR42_RS20955 at 28.829 kb on - strand, within RR42_RS20955 at 29.195 kb on + strand at 29.243 kb on + strand at 29.287 kb on + strand at 29.288 kb on - strand at 29.414 kb on + strand at 29.544 kb on - strand at 29.874 kb on - strand at 29.898 kb on - strand at 29.957 kb on + strand at 30.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 27,383 + RR42_RS20950 0.54 +0.1 27,383 + RR42_RS20950 0.54 +0.9 27,384 - RR42_RS20950 0.54 +0.5 27,384 - RR42_RS20950 0.54 +0.7 27,551 + RR42_RS20950 0.69 +0.3 27,551 + RR42_RS20950 0.69 -1.0 27,552 - RR42_RS20950 0.69 -0.9 27,687 - RR42_RS20950 0.82 +0.0 28,031 + -0.3 28,032 - -0.3 28,208 + -0.3 28,208 + -0.5 28,209 - -0.1 28,209 - -0.4 28,209 - -0.2 28,297 - -0.1 28,423 - RR42_RS20955 0.19 +0.7 28,438 + RR42_RS20955 0.20 +0.4 28,438 + RR42_RS20955 0.20 -0.6 28,439 - RR42_RS20955 0.20 +0.8 28,478 + RR42_RS20955 0.24 +0.0 28,488 - RR42_RS20955 0.25 -0.9 28,541 - RR42_RS20955 0.31 -0.9 28,541 - RR42_RS20955 0.31 +0.6 28,541 - RR42_RS20955 0.31 -0.1 28,541 - RR42_RS20955 0.31 +0.9 28,756 + RR42_RS20955 0.54 -1.3 28,828 + RR42_RS20955 0.62 -1.0 28,829 - RR42_RS20955 0.62 -0.2 28,829 - RR42_RS20955 0.62 -1.3 28,829 - RR42_RS20955 0.62 +0.2 29,195 + -0.4 29,243 + -0.5 29,287 + +0.1 29,288 - -0.1 29,414 + +0.4 29,544 - +0.4 29,874 - +1.1 29,898 - +0.1 29,957 + -0.6 30,126 + +0.5
Or see this region's nucleotide sequence