Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01680 and RR42_RS01685 are separated by 72 nucleotides RR42_RS01685 and RR42_RS01690 are separated by 97 nucleotides RR42_RS01690 and RR42_RS01695 are separated by 407 nucleotides
RR42_RS01680: RR42_RS01680 - cytochrome C550, at 382,374 to 383,582
_RS01680
RR42_RS01685: RR42_RS01685 - alpha/beta hydrolase, at 383,655 to 384,299
_RS01685
RR42_RS01690: RR42_RS01690 - ferredoxin, at 384,397 to 384,717
_RS01690
RR42_RS01695: RR42_RS01695 - C4-dicarboxylate transporter, at 385,125 to 386,426
_RS01695
Position (kb) 384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 383.573 kb on + strand at 384.275 kb on + strand at 384.276 kb on - strand at 384.280 kb on - strand at 384.280 kb on - strand at 384.280 kb on - strand at 384.287 kb on + strand at 384.488 kb on + strand, within RR42_RS01690 at 384.489 kb on - strand, within RR42_RS01690 at 384.506 kb on + strand, within RR42_RS01690 at 384.618 kb on - strand, within RR42_RS01690 at 384.639 kb on + strand, within RR42_RS01690 at 384.704 kb on + strand at 384.705 kb on - strand at 384.705 kb on - strand at 384.789 kb on - strand at 384.789 kb on - strand at 384.806 kb on + strand at 384.806 kb on + strand at 384.807 kb on - strand at 384.807 kb on - strand at 384.807 kb on - strand at 384.808 kb on + strand at 384.809 kb on - strand at 385.046 kb on - strand at 385.143 kb on + strand at 385.144 kb on - strand at 385.155 kb on + strand at 385.156 kb on - strand at 385.156 kb on - strand at 385.223 kb on - strand at 385.307 kb on + strand, within RR42_RS01695 at 385.365 kb on + strand, within RR42_RS01695 at 385.485 kb on + strand, within RR42_RS01695 at 385.485 kb on + strand, within RR42_RS01695 at 385.485 kb on + strand, within RR42_RS01695 at 385.595 kb on - strand, within RR42_RS01695 at 385.703 kb on + strand, within RR42_RS01695 at 385.704 kb on - strand, within RR42_RS01695 at 385.704 kb on - strand, within RR42_RS01695 at 385.704 kb on - strand, within RR42_RS01695 at 385.704 kb on - strand, within RR42_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 383,573 + -2.3 384,275 + -3.4 384,276 - -1.4 384,280 - -0.1 384,280 - -0.6 384,280 - -0.2 384,287 + -0.8 384,488 + RR42_RS01690 0.28 -2.4 384,489 - RR42_RS01690 0.29 -1.4 384,506 + RR42_RS01690 0.34 -3.1 384,618 - RR42_RS01690 0.69 -0.0 384,639 + RR42_RS01690 0.75 -1.0 384,704 + +0.4 384,705 - -0.3 384,705 - -1.7 384,789 - -0.4 384,789 - -0.4 384,806 + -1.0 384,806 + -0.2 384,807 - -1.6 384,807 - +0.2 384,807 - -0.3 384,808 + +1.8 384,809 - -1.6 385,046 - -0.0 385,143 + +0.2 385,144 - -0.6 385,155 + +0.2 385,156 - -1.4 385,156 - +2.5 385,223 - +0.0 385,307 + RR42_RS01695 0.14 +0.4 385,365 + RR42_RS01695 0.18 -1.9 385,485 + RR42_RS01695 0.28 +0.2 385,485 + RR42_RS01695 0.28 -0.3 385,485 + RR42_RS01695 0.28 +2.1 385,595 - RR42_RS01695 0.36 -1.1 385,703 + RR42_RS01695 0.44 +0.4 385,704 - RR42_RS01695 0.44 +0.5 385,704 - RR42_RS01695 0.44 -0.4 385,704 - RR42_RS01695 0.44 +0.7 385,704 - RR42_RS01695 0.44 +0.4
Or see this region's nucleotide sequence