Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01570 and RR42_RS01575 are separated by 355 nucleotides RR42_RS01575 and RR42_RS01580 are separated by 46 nucleotides
RR42_RS01570: RR42_RS01570 - GntR family transcriptional regulator, at 353,603 to 355,120
_RS01570
RR42_RS01575: RR42_RS01575 - omega amino acid--pyruvate aminotransferase, at 355,476 to 356,807
_RS01575
RR42_RS01580: RR42_RS01580 - methylmalonate-semialdehyde dehydrogenase, at 356,854 to 358,371
_RS01580
Position (kb) 355
356
357 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 354.631 kb on + strand, within RR42_RS01570 at 354.942 kb on + strand, within RR42_RS01570 at 355.132 kb on - strand at 355.132 kb on - strand at 355.309 kb on + strand at 355.310 kb on - strand at 355.333 kb on - strand at 355.359 kb on + strand at 355.359 kb on + strand at 355.360 kb on - strand at 355.361 kb on + strand at 355.361 kb on + strand at 355.362 kb on - strand at 355.369 kb on - strand at 355.387 kb on - strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.475 kb on + strand at 355.476 kb on - strand at 355.476 kb on - strand at 355.476 kb on - strand at 355.476 kb on - strand at 355.476 kb on - strand at 355.546 kb on - strand at 355.587 kb on + strand at 355.587 kb on + strand at 355.587 kb on + strand at 355.588 kb on - strand at 355.588 kb on - strand at 355.590 kb on + strand at 355.590 kb on + strand at 355.591 kb on - strand at 355.857 kb on + strand, within RR42_RS01575 at 355.857 kb on + strand, within RR42_RS01575 at 355.857 kb on + strand, within RR42_RS01575 at 355.858 kb on - strand, within RR42_RS01575 at 356.024 kb on + strand, within RR42_RS01575 at 356.024 kb on + strand, within RR42_RS01575 at 356.025 kb on - strand, within RR42_RS01575 at 356.040 kb on + strand, within RR42_RS01575 at 356.185 kb on - strand, within RR42_RS01575 at 356.437 kb on - strand, within RR42_RS01575 at 356.437 kb on - strand, within RR42_RS01575 at 356.437 kb on - strand, within RR42_RS01575 at 356.442 kb on + strand, within RR42_RS01575 at 356.443 kb on - strand, within RR42_RS01575 at 356.443 kb on - strand, within RR42_RS01575 at 356.443 kb on - strand, within RR42_RS01575 at 356.488 kb on - strand, within RR42_RS01575 at 356.489 kb on + strand at 356.489 kb on + strand, within RR42_RS01575 at 356.490 kb on - strand, within RR42_RS01575 at 356.490 kb on - strand, within RR42_RS01575 at 356.490 kb on - strand, within RR42_RS01575 at 356.493 kb on + strand, within RR42_RS01575 at 356.493 kb on + strand, within RR42_RS01575 at 356.493 kb on + strand, within RR42_RS01575 at 356.494 kb on - strand, within RR42_RS01575 at 356.494 kb on - strand, within RR42_RS01575 at 356.494 kb on - strand, within RR42_RS01575 at 356.494 kb on - strand, within RR42_RS01575 at 356.658 kb on + strand, within RR42_RS01575 at 356.897 kb on - strand at 357.381 kb on + strand, within RR42_RS01580 at 357.381 kb on + strand, within RR42_RS01580 at 357.381 kb on + strand, within RR42_RS01580 at 357.382 kb on - strand, within RR42_RS01580 at 357.571 kb on + strand, within RR42_RS01580 at 357.572 kb on - strand, within RR42_RS01580 at 357.578 kb on - strand, within RR42_RS01580 at 357.697 kb on + strand, within RR42_RS01580 at 357.698 kb on - strand, within RR42_RS01580
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 354,631 + RR42_RS01570 0.68 -0.6 354,942 + RR42_RS01570 0.88 -0.1 355,132 - -0.4 355,132 - +0.7 355,309 + +0.1 355,310 - +0.1 355,333 - -1.6 355,359 + +0.1 355,359 + -0.5 355,360 - -0.2 355,361 + +0.5 355,361 + -1.2 355,362 - +0.6 355,369 - +0.9 355,387 - +1.2 355,475 + -0.9 355,475 + +0.0 355,475 + -1.3 355,475 + +0.2 355,475 + -0.0 355,475 + -0.2 355,475 + +0.4 355,475 + +0.3 355,475 + -0.8 355,476 - -0.6 355,476 - -0.1 355,476 - -0.8 355,476 - +0.6 355,476 - -0.1 355,546 - -0.4 355,587 + -0.6 355,587 + -2.7 355,587 + +0.3 355,588 - -0.3 355,588 - +1.0 355,590 + +0.0 355,590 + -0.8 355,591 - +0.1 355,857 + RR42_RS01575 0.29 -1.4 355,857 + RR42_RS01575 0.29 +0.6 355,857 + RR42_RS01575 0.29 -0.4 355,858 - RR42_RS01575 0.29 -0.3 356,024 + RR42_RS01575 0.41 -0.3 356,024 + RR42_RS01575 0.41 +0.3 356,025 - RR42_RS01575 0.41 +0.2 356,040 + RR42_RS01575 0.42 -0.6 356,185 - RR42_RS01575 0.53 +0.1 356,437 - RR42_RS01575 0.72 -0.3 356,437 - RR42_RS01575 0.72 -0.2 356,437 - RR42_RS01575 0.72 -0.1 356,442 + RR42_RS01575 0.73 -0.3 356,443 - RR42_RS01575 0.73 +0.1 356,443 - RR42_RS01575 0.73 +0.3 356,443 - RR42_RS01575 0.73 -0.6 356,488 - RR42_RS01575 0.76 -0.7 356,489 + +3.2 356,489 + RR42_RS01575 0.76 -2.7 356,490 - RR42_RS01575 0.76 +0.7 356,490 - RR42_RS01575 0.76 -0.7 356,490 - RR42_RS01575 0.76 -0.8 356,493 + RR42_RS01575 0.76 -0.2 356,493 + RR42_RS01575 0.76 +1.7 356,493 + RR42_RS01575 0.76 -0.3 356,494 - RR42_RS01575 0.76 +0.6 356,494 - RR42_RS01575 0.76 +0.1 356,494 - RR42_RS01575 0.76 -0.1 356,494 - RR42_RS01575 0.76 -0.3 356,658 + RR42_RS01575 0.89 -1.5 356,897 - -0.1 357,381 + RR42_RS01580 0.35 -0.3 357,381 + RR42_RS01580 0.35 +0.3 357,381 + RR42_RS01580 0.35 +0.5 357,382 - RR42_RS01580 0.35 +0.1 357,571 + RR42_RS01580 0.47 -0.5 357,572 - RR42_RS01580 0.47 +1.5 357,578 - RR42_RS01580 0.48 -1.8 357,697 + RR42_RS01580 0.56 +0.8 357,698 - RR42_RS01580 0.56 +0.0
Or see this region's nucleotide sequence