Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1889

Experiment: Tetracycline 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1887 and Ga0059261_1888 overlap by 4 nucleotidesGa0059261_1888 and Ga0059261_1889 are separated by 28 nucleotidesGa0059261_1889 and Ga0059261_1890 are separated by 134 nucleotides Ga0059261_1887: Ga0059261_1887 - cation diffusion facilitator family transporter, at 1,996,525 to 1,997,442 _1887 Ga0059261_1888: Ga0059261_1888 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,997,439 to 1,998,029 _1888 Ga0059261_1889: Ga0059261_1889 - Predicted glycosylase, at 1,998,058 to 1,999,176 _1889 Ga0059261_1890: Ga0059261_1890 - transcriptional regulator, LacI family, at 1,999,311 to 2,000,360 _1890 Position (kb) 1998 1999 2000Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1997.074 kb on + strand, within Ga0059261_1887at 1997.075 kb on - strand, within Ga0059261_1887at 1998.017 kb on + strandat 1998.018 kb on - strandat 1998.018 kb on - strandat 1998.018 kb on - strandat 1998.029 kb on + strandat 1998.030 kb on - strandat 1998.030 kb on - strandat 1998.081 kb on + strandat 1998.081 kb on + strandat 1998.081 kb on + strandat 1998.081 kb on + strandat 1998.081 kb on + strandat 1998.081 kb on + strandat 1998.082 kb on - strandat 1998.082 kb on - strandat 1998.082 kb on - strandat 1998.082 kb on - strandat 1998.082 kb on - strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strandat 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.287 kb on + strand, within Ga0059261_1889at 1998.287 kb on + strand, within Ga0059261_1889at 1998.287 kb on + strand, within Ga0059261_1889at 1998.287 kb on + strand, within Ga0059261_1889at 1998.287 kb on + strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.296 kb on + strand, within Ga0059261_1889at 1998.296 kb on + strand, within Ga0059261_1889at 1998.296 kb on + strand, within Ga0059261_1889at 1998.297 kb on - strand, within Ga0059261_1889at 1998.297 kb on - strand, within Ga0059261_1889at 1998.297 kb on - strand, within Ga0059261_1889at 1998.297 kb on - strand, within Ga0059261_1889at 1998.434 kb on + strand, within Ga0059261_1889at 1998.434 kb on + strand, within Ga0059261_1889at 1998.435 kb on - strand, within Ga0059261_1889at 1998.435 kb on - strand, within Ga0059261_1889at 1998.435 kb on - strand, within Ga0059261_1889at 1998.521 kb on + strand, within Ga0059261_1889at 1998.521 kb on + strand, within Ga0059261_1889at 1998.521 kb on + strand, within Ga0059261_1889at 1998.521 kb on + strand, within Ga0059261_1889at 1998.521 kb on + strand, within Ga0059261_1889at 1998.521 kb on + strand, within Ga0059261_1889at 1998.521 kb on + strand, within Ga0059261_1889at 1998.522 kb on - strand, within Ga0059261_1889at 1998.522 kb on - strand, within Ga0059261_1889at 1998.522 kb on - strand, within Ga0059261_1889at 1998.522 kb on - strand, within Ga0059261_1889at 1998.522 kb on - strand, within Ga0059261_1889at 1998.522 kb on - strand, within Ga0059261_1889at 1998.522 kb on - strand, within Ga0059261_1889at 1998.555 kb on - strand, within Ga0059261_1889at 1998.555 kb on - strand, within Ga0059261_1889at 1998.653 kb on + strand, within Ga0059261_1889at 1998.653 kb on + strand, within Ga0059261_1889at 1998.653 kb on + strand, within Ga0059261_1889at 1998.653 kb on + strand, within Ga0059261_1889at 1998.653 kb on + strand, within Ga0059261_1889at 1998.653 kb on + strand, within Ga0059261_1889at 1998.653 kb on + strand, within Ga0059261_1889at 1998.654 kb on - strand, within Ga0059261_1889at 1998.654 kb on - strand, within Ga0059261_1889at 1998.654 kb on - strand, within Ga0059261_1889at 1998.654 kb on - strand, within Ga0059261_1889at 1998.654 kb on - strand, within Ga0059261_1889at 1998.654 kb on - strand, within Ga0059261_1889at 1998.746 kb on + strand, within Ga0059261_1889at 1998.747 kb on - strand, within Ga0059261_1889at 1998.747 kb on - strand, within Ga0059261_1889at 1998.747 kb on - strand, within Ga0059261_1889at 1998.747 kb on - strand, within Ga0059261_1889at 1998.785 kb on + strand, within Ga0059261_1889at 1998.785 kb on + strand, within Ga0059261_1889at 1998.785 kb on + strand, within Ga0059261_1889at 1998.785 kb on + strand, within Ga0059261_1889at 1998.786 kb on - strand, within Ga0059261_1889at 1998.786 kb on - strand, within Ga0059261_1889at 1998.786 kb on - strand, within Ga0059261_1889at 1998.786 kb on - strand, within Ga0059261_1889at 1998.786 kb on - strand, within Ga0059261_1889at 1998.786 kb on - strand, within Ga0059261_1889at 1998.786 kb on - strand, within Ga0059261_1889at 1998.909 kb on + strand, within Ga0059261_1889at 1998.945 kb on - strand, within Ga0059261_1889at 1998.945 kb on - strandat 1998.945 kb on - strand, within Ga0059261_1889at 1998.945 kb on - strand, within Ga0059261_1889at 1999.082 kb on + strandat 1999.082 kb on + strandat 1999.082 kb on + strandat 1999.082 kb on + strandat 1999.082 kb on + strandat 1999.082 kb on + strandat 1999.082 kb on + strandat 1999.082 kb on + strandat 1999.083 kb on - strandat 1999.083 kb on - strandat 1999.083 kb on - strandat 1999.083 kb on - strandat 1999.083 kb on - strandat 1999.083 kb on - strandat 1999.083 kb on - strandat 1999.083 kb on - strandat 1999.083 kb on - strandat 1999.184 kb on + strandat 1999.288 kb on + strandat 1999.351 kb on + strandat 1999.351 kb on + strandat 1999.352 kb on - strandat 1999.352 kb on - strandat 1999.352 kb on - strandat 1999.352 kb on - strandat 1999.352 kb on - strandat 1999.352 kb on - strandat 1999.557 kb on + strand, within Ga0059261_1890at 1999.557 kb on + strand, within Ga0059261_1890at 1999.557 kb on + strand, within Ga0059261_1890at 1999.557 kb on + strand, within Ga0059261_1890at 1999.557 kb on + strand, within Ga0059261_1890at 1999.558 kb on - strand, within Ga0059261_1890at 1999.558 kb on - strand, within Ga0059261_1890at 1999.641 kb on - strand, within Ga0059261_1890at 1999.735 kb on + strand, within Ga0059261_1890at 1999.735 kb on + strandat 1999.735 kb on + strand, within Ga0059261_1890at 1999.735 kb on + strand, within Ga0059261_1890at 1999.736 kb on - strand, within Ga0059261_1890at 1999.736 kb on - strand, within Ga0059261_1890at 1999.736 kb on - strand, within Ga0059261_1890at 1999.736 kb on - strand, within Ga0059261_1890at 2000.008 kb on - strand, within Ga0059261_1890at 2000.008 kb on - strand, within Ga0059261_1890

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.002 mg/ml
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1,997,074 + Ga0059261_1887 0.60 -0.4
1,997,075 - Ga0059261_1887 0.60 +0.4
1,998,017 + +0.0
1,998,018 - -1.3
1,998,018 - -0.3
1,998,018 - -0.5
1,998,029 + -0.3
1,998,030 - -0.5
1,998,030 - +0.3
1,998,081 + +0.3
1,998,081 + +0.6
1,998,081 + -0.9
1,998,081 + +0.2
1,998,081 + -1.1
1,998,081 + +1.1
1,998,082 - -0.6
1,998,082 - +0.0
1,998,082 - +1.4
1,998,082 - +0.6
1,998,082 - -1.6
1,998,128 + +0.3
1,998,128 + +0.8
1,998,128 + +0.3
1,998,128 + -0.3
1,998,128 + +0.9
1,998,128 + -1.7
1,998,128 + -0.9
1,998,128 + +0.1
1,998,128 + -0.1
1,998,129 - -0.2
1,998,129 - +0.8
1,998,129 - +0.9
1,998,129 - +0.6
1,998,129 - -2.3
1,998,129 - +0.1
1,998,129 - +0.0
1,998,129 - -0.0
1,998,129 - +0.5
1,998,179 + Ga0059261_1889 0.11 -0.0
1,998,179 + Ga0059261_1889 0.11 -0.0
1,998,179 + Ga0059261_1889 0.11 -0.9
1,998,179 + Ga0059261_1889 0.11 +0.9
1,998,179 + Ga0059261_1889 0.11 -0.2
1,998,179 + Ga0059261_1889 0.11 -0.1
1,998,179 + Ga0059261_1889 0.11 +0.4
1,998,179 + Ga0059261_1889 0.11 +0.7
1,998,179 + Ga0059261_1889 0.11 -0.1
1,998,179 + Ga0059261_1889 0.11 +1.9
1,998,179 + Ga0059261_1889 0.11 -0.2
1,998,179 + Ga0059261_1889 0.11 +0.6
1,998,179 + Ga0059261_1889 0.11 +0.8
1,998,179 + Ga0059261_1889 0.11 -0.6
1,998,179 + Ga0059261_1889 0.11 -0.9
1,998,179 + Ga0059261_1889 0.11 +0.4
1,998,179 + Ga0059261_1889 0.11 +0.5
1,998,179 + Ga0059261_1889 0.11 -0.4
1,998,179 + +0.5
1,998,179 + Ga0059261_1889 0.11 -1.7
1,998,179 + Ga0059261_1889 0.11 +0.1
1,998,179 + Ga0059261_1889 0.11 +0.5
1,998,179 + Ga0059261_1889 0.11 +0.3
1,998,179 + Ga0059261_1889 0.11 +0.7
1,998,179 + Ga0059261_1889 0.11 +1.4
1,998,179 + Ga0059261_1889 0.11 +1.1
1,998,180 - Ga0059261_1889 0.11 +0.8
1,998,180 - Ga0059261_1889 0.11 +0.7
1,998,180 - Ga0059261_1889 0.11 +0.4
1,998,180 - Ga0059261_1889 0.11 +0.0
1,998,180 - Ga0059261_1889 0.11 -0.2
1,998,180 - Ga0059261_1889 0.11 +1.0
1,998,180 - Ga0059261_1889 0.11 +0.7
1,998,180 - Ga0059261_1889 0.11 +1.3
1,998,180 - Ga0059261_1889 0.11 +0.7
1,998,180 - Ga0059261_1889 0.11 +1.4
1,998,180 - Ga0059261_1889 0.11 +0.2
1,998,180 - Ga0059261_1889 0.11 +0.2
1,998,180 - Ga0059261_1889 0.11 -0.1
1,998,180 - Ga0059261_1889 0.11 -0.4
1,998,180 - Ga0059261_1889 0.11 -0.4
1,998,180 - Ga0059261_1889 0.11 -0.3
1,998,180 - Ga0059261_1889 0.11 +0.7
1,998,180 - Ga0059261_1889 0.11 -0.5
1,998,287 + Ga0059261_1889 0.20 +1.2
1,998,287 + Ga0059261_1889 0.20 +0.4
1,998,287 + Ga0059261_1889 0.20 -0.4
1,998,287 + Ga0059261_1889 0.20 +0.9
1,998,287 + Ga0059261_1889 0.20 -0.2
1,998,288 - Ga0059261_1889 0.21 -1.0
1,998,288 - Ga0059261_1889 0.21 +1.1
1,998,288 - Ga0059261_1889 0.21 +0.3
1,998,288 - Ga0059261_1889 0.21 -0.1
1,998,288 - Ga0059261_1889 0.21 +2.1
1,998,288 - Ga0059261_1889 0.21 -0.3
1,998,288 - Ga0059261_1889 0.21 -0.5
1,998,288 - Ga0059261_1889 0.21 +0.5
1,998,296 + Ga0059261_1889 0.21 +0.1
1,998,296 + Ga0059261_1889 0.21 -0.2
1,998,296 + Ga0059261_1889 0.21 +0.3
1,998,297 - Ga0059261_1889 0.21 +0.5
1,998,297 - Ga0059261_1889 0.21 -0.3
1,998,297 - Ga0059261_1889 0.21 +0.5
1,998,297 - Ga0059261_1889 0.21 +0.8
1,998,434 + Ga0059261_1889 0.34 +1.1
1,998,434 + Ga0059261_1889 0.34 -1.2
1,998,435 - Ga0059261_1889 0.34 +1.3
1,998,435 - Ga0059261_1889 0.34 +0.2
1,998,435 - Ga0059261_1889 0.34 -0.2
1,998,521 + Ga0059261_1889 0.41 +0.0
1,998,521 + Ga0059261_1889 0.41 +0.5
1,998,521 + Ga0059261_1889 0.41 +0.4
1,998,521 + Ga0059261_1889 0.41 +0.1
1,998,521 + Ga0059261_1889 0.41 -1.5
1,998,521 + Ga0059261_1889 0.41 +0.9
1,998,521 + Ga0059261_1889 0.41 -0.7
1,998,522 - Ga0059261_1889 0.41 -0.1
1,998,522 - Ga0059261_1889 0.41 +0.2
1,998,522 - Ga0059261_1889 0.41 -0.6
1,998,522 - Ga0059261_1889 0.41 -0.3
1,998,522 - Ga0059261_1889 0.41 +1.6
1,998,522 - Ga0059261_1889 0.41 -0.5
1,998,522 - Ga0059261_1889 0.41 -0.1
1,998,555 - Ga0059261_1889 0.44 -0.7
1,998,555 - Ga0059261_1889 0.44 +1.7
1,998,653 + Ga0059261_1889 0.53 -1.2
1,998,653 + Ga0059261_1889 0.53 +0.7
1,998,653 + Ga0059261_1889 0.53 -0.6
1,998,653 + Ga0059261_1889 0.53 +0.8
1,998,653 + Ga0059261_1889 0.53 +0.1
1,998,653 + Ga0059261_1889 0.53 +0.5
1,998,653 + Ga0059261_1889 0.53 +0.5
1,998,654 - Ga0059261_1889 0.53 +0.4
1,998,654 - Ga0059261_1889 0.53 +1.5
1,998,654 - Ga0059261_1889 0.53 +0.3
1,998,654 - Ga0059261_1889 0.53 -2.9
1,998,654 - Ga0059261_1889 0.53 -0.0
1,998,654 - Ga0059261_1889 0.53 +1.4
1,998,746 + Ga0059261_1889 0.61 +0.1
1,998,747 - Ga0059261_1889 0.62 -0.1
1,998,747 - Ga0059261_1889 0.62 -1.4
1,998,747 - Ga0059261_1889 0.62 +0.8
1,998,747 - Ga0059261_1889 0.62 +0.1
1,998,785 + Ga0059261_1889 0.65 +0.1
1,998,785 + Ga0059261_1889 0.65 +0.8
1,998,785 + Ga0059261_1889 0.65 -0.3
1,998,785 + Ga0059261_1889 0.65 +0.5
1,998,786 - Ga0059261_1889 0.65 -0.7
1,998,786 - Ga0059261_1889 0.65 +0.3
1,998,786 - Ga0059261_1889 0.65 +0.6
1,998,786 - Ga0059261_1889 0.65 +1.1
1,998,786 - Ga0059261_1889 0.65 +0.7
1,998,786 - Ga0059261_1889 0.65 +0.5
1,998,786 - Ga0059261_1889 0.65 +0.2
1,998,909 + Ga0059261_1889 0.76 -0.1
1,998,945 - Ga0059261_1889 0.79 -0.3
1,998,945 - +0.5
1,998,945 - Ga0059261_1889 0.79 +0.3
1,998,945 - Ga0059261_1889 0.79 -0.4
1,999,082 + -1.5
1,999,082 + -0.6
1,999,082 + -0.0
1,999,082 + +0.4
1,999,082 + +0.0
1,999,082 + +2.9
1,999,082 + -0.3
1,999,082 + +0.4
1,999,083 - +0.5
1,999,083 - +0.8
1,999,083 - -1.6
1,999,083 - -0.3
1,999,083 - -0.1
1,999,083 - +1.1
1,999,083 - -0.4
1,999,083 - -0.5
1,999,083 - -0.2
1,999,184 + +0.2
1,999,288 + -0.5
1,999,351 + +0.1
1,999,351 + +0.1
1,999,352 - -0.9
1,999,352 - -1.0
1,999,352 - -0.9
1,999,352 - +1.8
1,999,352 - -0.1
1,999,352 - -0.4
1,999,557 + Ga0059261_1890 0.23 +0.6
1,999,557 + Ga0059261_1890 0.23 -1.0
1,999,557 + Ga0059261_1890 0.23 -0.0
1,999,557 + Ga0059261_1890 0.23 -0.5
1,999,557 + Ga0059261_1890 0.23 -0.7
1,999,558 - Ga0059261_1890 0.24 +1.5
1,999,558 - Ga0059261_1890 0.24 -0.4
1,999,641 - Ga0059261_1890 0.31 +0.3
1,999,735 + Ga0059261_1890 0.40 +0.2
1,999,735 + -0.9
1,999,735 + Ga0059261_1890 0.40 -0.5
1,999,735 + Ga0059261_1890 0.40 -1.1
1,999,736 - Ga0059261_1890 0.40 +0.2
1,999,736 - Ga0059261_1890 0.40 -0.6
1,999,736 - Ga0059261_1890 0.40 -2.3
1,999,736 - Ga0059261_1890 0.40 +1.1
2,000,008 - Ga0059261_1890 0.66 +0.6
2,000,008 - Ga0059261_1890 0.66 -0.8

Or see this region's nucleotide sequence