Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0946

Experiment: Tetracycline 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0945 and Ga0059261_0946 are separated by 72 nucleotidesGa0059261_0946 and Ga0059261_0947 overlap by 8 nucleotides Ga0059261_0945: Ga0059261_0945 - Zn-dependent hydrolases, including glyoxylases, at 975,130 to 975,996 _0945 Ga0059261_0946: Ga0059261_0946 - Uncharacterized protein conserved in bacteria, at 976,069 to 976,503 _0946 Ga0059261_0947: Ga0059261_0947 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 976,496 to 977,842 _0947 Position (kb) 976 977Strain fitness (log2 ratio) -2 -1 0 1 2at 975.181 kb on + strandat 975.181 kb on + strandat 975.181 kb on + strandat 975.181 kb on + strandat 975.181 kb on + strandat 975.181 kb on + strandat 975.182 kb on - strandat 975.182 kb on - strandat 975.182 kb on - strandat 975.182 kb on - strandat 975.372 kb on + strand, within Ga0059261_0945at 975.372 kb on + strand, within Ga0059261_0945at 975.372 kb on + strand, within Ga0059261_0945at 975.372 kb on + strand, within Ga0059261_0945at 975.373 kb on - strand, within Ga0059261_0945at 975.414 kb on + strand, within Ga0059261_0945at 975.415 kb on - strand, within Ga0059261_0945at 975.561 kb on + strand, within Ga0059261_0945at 975.561 kb on + strand, within Ga0059261_0945at 975.561 kb on + strand, within Ga0059261_0945at 975.562 kb on - strand, within Ga0059261_0945at 975.581 kb on - strand, within Ga0059261_0945at 975.631 kb on + strand, within Ga0059261_0945at 975.631 kb on + strand, within Ga0059261_0945at 975.632 kb on - strand, within Ga0059261_0945at 975.742 kb on + strand, within Ga0059261_0945at 975.742 kb on + strand, within Ga0059261_0945at 975.742 kb on + strand, within Ga0059261_0945at 975.742 kb on + strand, within Ga0059261_0945at 975.743 kb on - strand, within Ga0059261_0945at 975.743 kb on - strand, within Ga0059261_0945at 975.743 kb on - strand, within Ga0059261_0945at 975.743 kb on - strand, within Ga0059261_0945at 975.743 kb on - strand, within Ga0059261_0945at 975.743 kb on - strand, within Ga0059261_0945at 975.743 kb on - strand, within Ga0059261_0945at 975.743 kb on - strand, within Ga0059261_0945at 975.744 kb on + strand, within Ga0059261_0945at 975.744 kb on + strand, within Ga0059261_0945at 975.744 kb on + strand, within Ga0059261_0945at 975.744 kb on + strand, within Ga0059261_0945at 975.744 kb on + strand, within Ga0059261_0945at 975.744 kb on + strand, within Ga0059261_0945at 975.744 kb on + strand, within Ga0059261_0945at 975.744 kb on + strand, within Ga0059261_0945at 975.744 kb on + strand, within Ga0059261_0945at 975.744 kb on + strand, within Ga0059261_0945at 975.745 kb on - strand, within Ga0059261_0945at 975.745 kb on - strand, within Ga0059261_0945at 975.745 kb on - strand, within Ga0059261_0945at 975.745 kb on - strand, within Ga0059261_0945at 975.745 kb on - strand, within Ga0059261_0945at 975.745 kb on - strand, within Ga0059261_0945at 975.766 kb on + strand, within Ga0059261_0945at 975.767 kb on - strand, within Ga0059261_0945at 975.961 kb on + strandat 975.961 kb on + strandat 975.961 kb on + strandat 975.961 kb on + strandat 975.961 kb on + strandat 975.961 kb on + strandat 975.961 kb on + strandat 975.962 kb on - strandat 975.962 kb on - strandat 975.962 kb on - strandat 975.962 kb on - strandat 975.962 kb on - strandat 975.990 kb on + strandat 975.990 kb on + strandat 975.991 kb on - strandat 975.991 kb on - strandat 975.991 kb on - strandat 976.033 kb on - strandat 976.037 kb on - strandat 976.042 kb on + strandat 976.047 kb on + strandat 976.057 kb on - strandat 976.057 kb on - strandat 976.066 kb on - strandat 976.210 kb on + strand, within Ga0059261_0946at 976.211 kb on - strand, within Ga0059261_0946at 976.411 kb on + strand, within Ga0059261_0946at 976.411 kb on + strand, within Ga0059261_0946at 976.411 kb on + strand, within Ga0059261_0946at 976.411 kb on + strand, within Ga0059261_0946at 976.411 kb on + strand, within Ga0059261_0946at 976.411 kb on + strand, within Ga0059261_0946at 976.411 kb on + strand, within Ga0059261_0946at 976.486 kb on - strandat 976.544 kb on + strandat 976.544 kb on + strandat 976.544 kb on + strandat 976.544 kb on + strandat 976.544 kb on + strandat 976.544 kb on + strandat 976.544 kb on + strandat 976.545 kb on - strandat 976.545 kb on - strandat 976.654 kb on + strand, within Ga0059261_0947at 976.654 kb on + strand, within Ga0059261_0947at 976.654 kb on + strand, within Ga0059261_0947at 976.673 kb on + strand, within Ga0059261_0947at 976.673 kb on + strand, within Ga0059261_0947at 976.673 kb on + strand, within Ga0059261_0947at 976.674 kb on - strand, within Ga0059261_0947at 976.883 kb on + strand, within Ga0059261_0947at 976.884 kb on - strand, within Ga0059261_0947at 976.884 kb on - strand, within Ga0059261_0947at 976.884 kb on - strand, within Ga0059261_0947at 976.884 kb on - strand, within Ga0059261_0947at 976.972 kb on + strand, within Ga0059261_0947at 976.972 kb on + strand, within Ga0059261_0947at 976.972 kb on + strand, within Ga0059261_0947at 976.972 kb on + strand, within Ga0059261_0947at 976.972 kb on + strand, within Ga0059261_0947at 976.973 kb on - strand, within Ga0059261_0947at 976.973 kb on - strandat 977.064 kb on - strand, within Ga0059261_0947at 977.180 kb on + strand, within Ga0059261_0947at 977.180 kb on + strand, within Ga0059261_0947at 977.180 kb on + strand, within Ga0059261_0947at 977.181 kb on - strand, within Ga0059261_0947at 977.181 kb on - strand, within Ga0059261_0947at 977.181 kb on - strand, within Ga0059261_0947at 977.181 kb on - strand, within Ga0059261_0947at 977.181 kb on - strand, within Ga0059261_0947at 977.181 kb on - strand, within Ga0059261_0947at 977.294 kb on + strand, within Ga0059261_0947at 977.295 kb on - strand, within Ga0059261_0947at 977.295 kb on - strand, within Ga0059261_0947

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.002 mg/ml
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975,181 + +1.4
975,181 + +0.4
975,181 + -0.5
975,181 + -0.1
975,181 + +0.7
975,181 + +0.9
975,182 - +0.5
975,182 - -0.1
975,182 - -1.4
975,182 - +0.3
975,372 + Ga0059261_0945 0.28 +0.7
975,372 + Ga0059261_0945 0.28 +0.5
975,372 + Ga0059261_0945 0.28 +0.3
975,372 + Ga0059261_0945 0.28 -0.2
975,373 - Ga0059261_0945 0.28 +1.2
975,414 + Ga0059261_0945 0.33 -0.5
975,415 - Ga0059261_0945 0.33 -0.3
975,561 + Ga0059261_0945 0.50 -1.2
975,561 + Ga0059261_0945 0.50 -0.9
975,561 + Ga0059261_0945 0.50 +1.2
975,562 - Ga0059261_0945 0.50 +0.1
975,581 - Ga0059261_0945 0.52 +0.5
975,631 + Ga0059261_0945 0.58 +0.6
975,631 + Ga0059261_0945 0.58 +0.2
975,632 - Ga0059261_0945 0.58 +0.5
975,742 + Ga0059261_0945 0.71 +1.2
975,742 + Ga0059261_0945 0.71 +0.2
975,742 + Ga0059261_0945 0.71 -0.5
975,742 + Ga0059261_0945 0.71 -0.0
975,743 - Ga0059261_0945 0.71 +1.0
975,743 - Ga0059261_0945 0.71 +0.5
975,743 - Ga0059261_0945 0.71 +0.2
975,743 - Ga0059261_0945 0.71 -1.1
975,743 - Ga0059261_0945 0.71 -0.1
975,743 - Ga0059261_0945 0.71 +1.4
975,743 - Ga0059261_0945 0.71 +0.2
975,743 - Ga0059261_0945 0.71 +0.2
975,744 + Ga0059261_0945 0.71 +1.8
975,744 + Ga0059261_0945 0.71 +1.0
975,744 + Ga0059261_0945 0.71 -0.9
975,744 + Ga0059261_0945 0.71 -1.4
975,744 + Ga0059261_0945 0.71 +0.0
975,744 + Ga0059261_0945 0.71 -0.6
975,744 + Ga0059261_0945 0.71 -0.4
975,744 + Ga0059261_0945 0.71 -0.5
975,744 + Ga0059261_0945 0.71 -0.1
975,744 + Ga0059261_0945 0.71 -0.1
975,745 - Ga0059261_0945 0.71 +1.3
975,745 - Ga0059261_0945 0.71 +0.1
975,745 - Ga0059261_0945 0.71 +0.1
975,745 - Ga0059261_0945 0.71 -0.5
975,745 - Ga0059261_0945 0.71 -0.8
975,745 - Ga0059261_0945 0.71 -1.0
975,766 + Ga0059261_0945 0.73 +0.1
975,767 - Ga0059261_0945 0.73 +2.0
975,961 + +0.7
975,961 + +0.9
975,961 + -1.4
975,961 + +0.3
975,961 + -0.2
975,961 + +0.4
975,961 + -0.4
975,962 - -0.4
975,962 - +1.0
975,962 - +0.7
975,962 - -0.8
975,962 - +0.2
975,990 + +0.2
975,990 + +0.2
975,991 - +1.0
975,991 - +1.1
975,991 - +0.2
976,033 - +0.9
976,037 - +1.7
976,042 + -0.7
976,047 + +1.7
976,057 - +0.0
976,057 - +0.0
976,066 - -0.9
976,210 + Ga0059261_0946 0.32 +0.2
976,211 - Ga0059261_0946 0.33 +1.6
976,411 + Ga0059261_0946 0.79 +0.7
976,411 + Ga0059261_0946 0.79 +0.4
976,411 + Ga0059261_0946 0.79 +1.1
976,411 + Ga0059261_0946 0.79 -0.5
976,411 + Ga0059261_0946 0.79 +0.0
976,411 + Ga0059261_0946 0.79 -1.3
976,411 + Ga0059261_0946 0.79 +1.1
976,486 - +1.7
976,544 + -0.2
976,544 + -1.5
976,544 + +0.5
976,544 + +0.2
976,544 + -0.8
976,544 + -0.2
976,544 + -0.2
976,545 - -0.3
976,545 - +0.9
976,654 + Ga0059261_0947 0.12 -0.8
976,654 + Ga0059261_0947 0.12 -0.3
976,654 + Ga0059261_0947 0.12 -0.3
976,673 + Ga0059261_0947 0.13 -1.9
976,673 + Ga0059261_0947 0.13 -1.0
976,673 + Ga0059261_0947 0.13 -0.1
976,674 - Ga0059261_0947 0.13 -0.1
976,883 + Ga0059261_0947 0.29 +0.1
976,884 - Ga0059261_0947 0.29 +0.0
976,884 - Ga0059261_0947 0.29 -2.5
976,884 - Ga0059261_0947 0.29 +0.2
976,884 - Ga0059261_0947 0.29 +0.1
976,972 + Ga0059261_0947 0.35 +0.2
976,972 + Ga0059261_0947 0.35 +0.2
976,972 + Ga0059261_0947 0.35 -0.7
976,972 + Ga0059261_0947 0.35 +0.9
976,972 + Ga0059261_0947 0.35 -0.2
976,973 - Ga0059261_0947 0.35 -1.4
976,973 - -0.4
977,064 - Ga0059261_0947 0.42 +0.4
977,180 + Ga0059261_0947 0.51 +0.3
977,180 + Ga0059261_0947 0.51 +1.7
977,180 + Ga0059261_0947 0.51 -0.9
977,181 - Ga0059261_0947 0.51 +0.9
977,181 - Ga0059261_0947 0.51 +1.2
977,181 - Ga0059261_0947 0.51 +1.2
977,181 - Ga0059261_0947 0.51 +1.4
977,181 - Ga0059261_0947 0.51 +1.2
977,181 - Ga0059261_0947 0.51 -0.0
977,294 + Ga0059261_0947 0.59 +0.2
977,295 - Ga0059261_0947 0.59 -1.7
977,295 - Ga0059261_0947 0.59 -1.0

Or see this region's nucleotide sequence