Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0818

Experiment: Tetracycline 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0817 and Ga0059261_0818 are separated by 184 nucleotidesGa0059261_0818 and Ga0059261_0819 are separated by 78 nucleotides Ga0059261_0817: Ga0059261_0817 - GTP-binding protein TypA/BipA, at 858,223 to 860,037 _0817 Ga0059261_0818: Ga0059261_0818 - OmpA family, at 860,222 to 861,109 _0818 Ga0059261_0819: Ga0059261_0819 - Holliday junction DNA helicase subunit RuvB, at 861,188 to 862,216 _0819 Position (kb) 860 861 862Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 859.417 kb on + strand, within Ga0059261_0817at 859.418 kb on - strand, within Ga0059261_0817at 859.571 kb on - strand, within Ga0059261_0817at 859.571 kb on - strand, within Ga0059261_0817at 859.633 kb on + strand, within Ga0059261_0817at 859.634 kb on - strand, within Ga0059261_0817at 859.711 kb on + strand, within Ga0059261_0817at 859.711 kb on + strand, within Ga0059261_0817at 859.711 kb on + strand, within Ga0059261_0817at 859.712 kb on - strand, within Ga0059261_0817at 859.712 kb on - strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.771 kb on + strand, within Ga0059261_0817at 859.772 kb on - strand, within Ga0059261_0817at 859.772 kb on - strand, within Ga0059261_0817at 859.772 kb on - strand, within Ga0059261_0817at 860.035 kb on + strandat 860.036 kb on - strandat 860.124 kb on + strandat 860.125 kb on - strandat 860.336 kb on + strand, within Ga0059261_0818at 860.336 kb on + strand, within Ga0059261_0818at 860.337 kb on - strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.389 kb on + strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.390 kb on - strand, within Ga0059261_0818at 860.474 kb on + strand, within Ga0059261_0818at 860.723 kb on + strandat 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.723 kb on + strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.724 kb on - strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.725 kb on + strand, within Ga0059261_0818at 860.726 kb on - strand, within Ga0059261_0818at 860.726 kb on - strand, within Ga0059261_0818at 860.859 kb on - strand, within Ga0059261_0818at 860.859 kb on - strand, within Ga0059261_0818at 860.861 kb on - strand, within Ga0059261_0818at 860.861 kb on - strand, within Ga0059261_0818at 860.930 kb on + strand, within Ga0059261_0818at 860.930 kb on + strand, within Ga0059261_0818at 860.931 kb on - strand, within Ga0059261_0818at 860.931 kb on - strand, within Ga0059261_0818at 861.174 kb on + strandat 861.189 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.002 mg/ml
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859,417 + Ga0059261_0817 0.66 -1.8
859,418 - Ga0059261_0817 0.66 +0.3
859,571 - Ga0059261_0817 0.74 -0.9
859,571 - Ga0059261_0817 0.74 -0.1
859,633 + Ga0059261_0817 0.78 +1.0
859,634 - Ga0059261_0817 0.78 +0.7
859,711 + Ga0059261_0817 0.82 +0.2
859,711 + Ga0059261_0817 0.82 -0.2
859,711 + Ga0059261_0817 0.82 -0.6
859,712 - Ga0059261_0817 0.82 -0.4
859,712 - Ga0059261_0817 0.82 -0.5
859,771 + Ga0059261_0817 0.85 +0.6
859,771 + Ga0059261_0817 0.85 +0.2
859,771 + Ga0059261_0817 0.85 +0.1
859,771 + Ga0059261_0817 0.85 +1.0
859,772 - Ga0059261_0817 0.85 -0.9
859,772 - Ga0059261_0817 0.85 +0.1
859,772 - Ga0059261_0817 0.85 -0.2
860,035 + +0.8
860,036 - +1.9
860,124 + +0.3
860,125 - -0.1
860,336 + Ga0059261_0818 0.13 +0.3
860,336 + Ga0059261_0818 0.13 -0.7
860,337 - Ga0059261_0818 0.13 +0.6
860,389 + Ga0059261_0818 0.19 +0.4
860,389 + Ga0059261_0818 0.19 -0.1
860,389 + Ga0059261_0818 0.19 -0.8
860,389 + Ga0059261_0818 0.19 -2.8
860,390 - Ga0059261_0818 0.19 -0.2
860,390 - Ga0059261_0818 0.19 +0.1
860,390 - Ga0059261_0818 0.19 -1.5
860,474 + Ga0059261_0818 0.28 +0.1
860,723 + -0.4
860,723 + Ga0059261_0818 0.56 +0.3
860,723 + Ga0059261_0818 0.56 -0.2
860,723 + Ga0059261_0818 0.56 +0.5
860,723 + Ga0059261_0818 0.56 +0.1
860,724 - Ga0059261_0818 0.57 -1.5
860,724 - Ga0059261_0818 0.57 +0.1
860,724 - Ga0059261_0818 0.57 +0.2
860,724 - Ga0059261_0818 0.57 +0.4
860,724 - Ga0059261_0818 0.57 -0.7
860,724 - Ga0059261_0818 0.57 +0.0
860,724 - Ga0059261_0818 0.57 +0.5
860,724 - Ga0059261_0818 0.57 -0.6
860,724 - Ga0059261_0818 0.57 -0.3
860,724 - Ga0059261_0818 0.57 +0.4
860,724 - Ga0059261_0818 0.57 -1.9
860,724 - Ga0059261_0818 0.57 -1.0
860,725 + Ga0059261_0818 0.57 -0.9
860,725 + Ga0059261_0818 0.57 -1.4
860,725 + Ga0059261_0818 0.57 -0.7
860,725 + Ga0059261_0818 0.57 -0.3
860,725 + Ga0059261_0818 0.57 -0.7
860,726 - Ga0059261_0818 0.57 +0.1
860,726 - Ga0059261_0818 0.57 +0.5
860,859 - Ga0059261_0818 0.72 -1.0
860,859 - Ga0059261_0818 0.72 +0.1
860,861 - Ga0059261_0818 0.72 -0.1
860,861 - Ga0059261_0818 0.72 +1.0
860,930 + Ga0059261_0818 0.80 -1.1
860,930 + Ga0059261_0818 0.80 -0.2
860,931 - Ga0059261_0818 0.80 -0.7
860,931 - Ga0059261_0818 0.80 +0.4
861,174 + +0.9
861,189 + -0.1

Or see this region's nucleotide sequence