Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0750

Experiment: Tetracycline 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0747 and Ga0059261_0748 overlap by 1 nucleotidesGa0059261_0748 and Ga0059261_0749 are separated by 109 nucleotidesGa0059261_0749 and Ga0059261_0750 are separated by 93 nucleotidesGa0059261_0750 and Ga0059261_0751 are separated by 1 nucleotides Ga0059261_0747: Ga0059261_0747 - Protein of unknown function (DUF2975), at 776,526 to 777,041 _0747 Ga0059261_0748: Ga0059261_0748 - Predicted transcriptional regulator, at 777,041 to 777,250 _0748 Ga0059261_0749: Ga0059261_0749 - Membrane transporters of cations and cationic drugs, at 777,360 to 777,680 _0749 Ga0059261_0750: Ga0059261_0750 - NADH:ubiquinone oxidoreductase subunit 3 (chain A), at 777,774 to 778,151 _0750 Ga0059261_0751: Ga0059261_0751 - DNA repair protein RadA, at 778,153 to 779,520 _0751 Position (kb) 777 778 779Strain fitness (log2 ratio) -2 -1 0 1 2 3at 777.233 kb on + strandat 777.270 kb on + strandat 777.270 kb on + strandat 777.270 kb on + strandat 777.343 kb on + strandat 777.343 kb on + strandat 777.344 kb on - strandat 777.344 kb on - strandat 777.344 kb on - strandat 777.372 kb on + strandat 777.372 kb on + strandat 777.372 kb on + strandat 777.372 kb on + strandat 777.373 kb on - strandat 777.373 kb on - strandat 777.534 kb on + strand, within Ga0059261_0749at 777.535 kb on - strand, within Ga0059261_0749at 777.535 kb on - strand, within Ga0059261_0749at 777.535 kb on - strand, within Ga0059261_0749at 777.535 kb on - strand, within Ga0059261_0749at 777.535 kb on - strand, within Ga0059261_0749at 777.640 kb on + strandat 777.640 kb on + strand, within Ga0059261_0749at 777.640 kb on + strand, within Ga0059261_0749at 777.641 kb on - strand, within Ga0059261_0749at 777.641 kb on - strand, within Ga0059261_0749at 777.641 kb on - strand, within Ga0059261_0749at 777.829 kb on + strand, within Ga0059261_0750at 777.830 kb on - strand, within Ga0059261_0750at 777.918 kb on + strand, within Ga0059261_0750at 777.919 kb on - strand, within Ga0059261_0750at 777.919 kb on - strand, within Ga0059261_0750at 777.919 kb on - strand, within Ga0059261_0750at 777.975 kb on + strand, within Ga0059261_0750at 777.975 kb on + strand, within Ga0059261_0750at 777.976 kb on - strand, within Ga0059261_0750at 777.976 kb on - strand, within Ga0059261_0750at 778.116 kb on + strandat 778.116 kb on + strandat 778.116 kb on + strandat 778.116 kb on + strandat 778.116 kb on + strandat 778.116 kb on + strandat 778.116 kb on + strandat 778.117 kb on - strandat 778.117 kb on - strandat 778.117 kb on - strandat 778.117 kb on - strandat 778.149 kb on + strandat 778.149 kb on + strandat 778.167 kb on + strandat 778.167 kb on + strandat 778.167 kb on + strandat 778.167 kb on + strandat 778.167 kb on + strandat 778.167 kb on + strandat 778.167 kb on + strandat 778.167 kb on + strandat 778.167 kb on + strandat 778.168 kb on - strandat 778.168 kb on - strandat 778.168 kb on - strandat 778.168 kb on - strandat 778.168 kb on - strandat 778.451 kb on + strand, within Ga0059261_0751at 778.452 kb on - strand, within Ga0059261_0751at 778.495 kb on + strandat 778.577 kb on - strand, within Ga0059261_0751at 778.630 kb on + strand, within Ga0059261_0751at 778.631 kb on - strand, within Ga0059261_0751at 778.631 kb on - strand, within Ga0059261_0751at 778.631 kb on - strand, within Ga0059261_0751at 778.773 kb on + strand, within Ga0059261_0751at 778.773 kb on + strand, within Ga0059261_0751at 778.774 kb on - strand, within Ga0059261_0751at 778.774 kb on - strand, within Ga0059261_0751at 778.778 kb on + strand, within Ga0059261_0751at 778.779 kb on - strand, within Ga0059261_0751at 778.779 kb on - strand, within Ga0059261_0751at 778.779 kb on - strand, within Ga0059261_0751at 778.779 kb on - strand, within Ga0059261_0751at 778.779 kb on - strand, within Ga0059261_0751at 778.824 kb on + strand, within Ga0059261_0751at 778.824 kb on + strand, within Ga0059261_0751at 778.824 kb on + strand, within Ga0059261_0751at 778.824 kb on + strand, within Ga0059261_0751at 778.824 kb on + strand, within Ga0059261_0751at 778.824 kb on + strand, within Ga0059261_0751at 778.824 kb on + strand, within Ga0059261_0751at 778.825 kb on - strand, within Ga0059261_0751at 778.825 kb on - strand, within Ga0059261_0751at 778.825 kb on - strand, within Ga0059261_0751at 778.825 kb on - strand, within Ga0059261_0751at 778.825 kb on - strand, within Ga0059261_0751at 778.825 kb on - strand, within Ga0059261_0751at 779.150 kb on - strand, within Ga0059261_0751

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.002 mg/ml
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777,233 + +0.3
777,270 + -0.3
777,270 + -0.1
777,270 + +0.0
777,343 + -0.7
777,343 + +1.3
777,344 - +0.5
777,344 - +0.4
777,344 - +0.9
777,372 + -0.9
777,372 + -0.4
777,372 + -0.6
777,372 + +0.0
777,373 - -0.7
777,373 - +0.6
777,534 + Ga0059261_0749 0.54 +0.8
777,535 - Ga0059261_0749 0.55 +0.6
777,535 - Ga0059261_0749 0.55 +0.4
777,535 - Ga0059261_0749 0.55 +0.8
777,535 - Ga0059261_0749 0.55 +0.2
777,535 - Ga0059261_0749 0.55 -0.3
777,640 + -0.3
777,640 + Ga0059261_0749 0.87 +1.5
777,640 + Ga0059261_0749 0.87 +0.4
777,641 - Ga0059261_0749 0.88 +0.4
777,641 - Ga0059261_0749 0.88 -0.3
777,641 - Ga0059261_0749 0.88 -1.4
777,829 + Ga0059261_0750 0.15 +0.7
777,830 - Ga0059261_0750 0.15 -0.6
777,918 + Ga0059261_0750 0.38 +0.5
777,919 - Ga0059261_0750 0.38 +0.5
777,919 - Ga0059261_0750 0.38 -0.0
777,919 - Ga0059261_0750 0.38 -0.3
777,975 + Ga0059261_0750 0.53 +0.5
777,975 + Ga0059261_0750 0.53 -0.2
777,976 - Ga0059261_0750 0.53 +0.8
777,976 - Ga0059261_0750 0.53 +0.9
778,116 + +0.3
778,116 + +0.2
778,116 + -0.3
778,116 + +0.5
778,116 + -0.7
778,116 + -0.4
778,116 + -0.4
778,117 - +0.4
778,117 - -1.8
778,117 - -0.2
778,117 - +2.9
778,149 + +0.3
778,149 + +0.7
778,167 + +0.5
778,167 + -0.3
778,167 + -0.2
778,167 + +0.1
778,167 + -1.4
778,167 + -0.8
778,167 + +0.0
778,167 + -0.0
778,167 + +0.6
778,168 - +1.0
778,168 - +0.3
778,168 - -0.9
778,168 - -0.0
778,168 - -0.9
778,451 + Ga0059261_0751 0.22 -0.0
778,452 - Ga0059261_0751 0.22 +0.7
778,495 + -0.4
778,577 - Ga0059261_0751 0.31 -0.3
778,630 + Ga0059261_0751 0.35 +0.7
778,631 - Ga0059261_0751 0.35 +0.2
778,631 - Ga0059261_0751 0.35 -1.1
778,631 - Ga0059261_0751 0.35 +1.1
778,773 + Ga0059261_0751 0.45 +0.3
778,773 + Ga0059261_0751 0.45 -0.4
778,774 - Ga0059261_0751 0.45 +0.3
778,774 - Ga0059261_0751 0.45 +0.4
778,778 + Ga0059261_0751 0.46 -2.5
778,779 - Ga0059261_0751 0.46 +0.3
778,779 - Ga0059261_0751 0.46 -0.2
778,779 - Ga0059261_0751 0.46 -1.1
778,779 - Ga0059261_0751 0.46 -1.6
778,779 - Ga0059261_0751 0.46 +0.7
778,824 + Ga0059261_0751 0.49 -0.8
778,824 + Ga0059261_0751 0.49 +0.5
778,824 + Ga0059261_0751 0.49 +0.4
778,824 + Ga0059261_0751 0.49 -1.9
778,824 + Ga0059261_0751 0.49 -0.0
778,824 + Ga0059261_0751 0.49 +0.4
778,824 + Ga0059261_0751 0.49 +0.9
778,825 - Ga0059261_0751 0.49 -0.4
778,825 - Ga0059261_0751 0.49 +0.9
778,825 - Ga0059261_0751 0.49 -1.0
778,825 - Ga0059261_0751 0.49 -0.2
778,825 - Ga0059261_0751 0.49 +0.9
778,825 - Ga0059261_0751 0.49 -0.7
779,150 - Ga0059261_0751 0.73 -0.7

Or see this region's nucleotide sequence