Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0746

Experiment: Tetracycline 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0744 and Ga0059261_0745 overlap by 4 nucleotidesGa0059261_0745 and Ga0059261_0746 are separated by 86 nucleotidesGa0059261_0746 and Ga0059261_0747 are separated by 92 nucleotidesGa0059261_0747 and Ga0059261_0748 overlap by 1 nucleotidesGa0059261_0748 and Ga0059261_0749 are separated by 109 nucleotides Ga0059261_0744: Ga0059261_0744 - NifU homolog involved in Fe-S cluster formation, at 774,441 to 774,875 _0744 Ga0059261_0745: Ga0059261_0745 - Uncharacterized membrane protein, required for colicin V production, at 774,872 to 775,447 _0745 Ga0059261_0746: Ga0059261_0746 - Predicted permease, DMT superfamily, at 775,534 to 776,433 _0746 Ga0059261_0747: Ga0059261_0747 - Protein of unknown function (DUF2975), at 776,526 to 777,041 _0747 Ga0059261_0748: Ga0059261_0748 - Predicted transcriptional regulator, at 777,041 to 777,250 _0748 Ga0059261_0749: Ga0059261_0749 - Membrane transporters of cations and cationic drugs, at 777,360 to 777,680 _0749 Position (kb) 775 776 777Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 774.887 kb on - strandat 774.887 kb on - strandat 775.008 kb on + strand, within Ga0059261_0745at 775.009 kb on - strand, within Ga0059261_0745at 775.063 kb on + strand, within Ga0059261_0745at 775.063 kb on + strandat 775.064 kb on - strand, within Ga0059261_0745at 775.064 kb on - strand, within Ga0059261_0745at 775.078 kb on + strand, within Ga0059261_0745at 775.426 kb on + strandat 775.426 kb on + strandat 775.451 kb on + strandat 775.451 kb on + strandat 775.451 kb on + strandat 775.452 kb on - strandat 775.452 kb on - strandat 775.482 kb on + strandat 775.483 kb on - strandat 775.516 kb on + strandat 775.516 kb on + strandat 775.517 kb on - strandat 775.517 kb on - strandat 775.517 kb on - strandat 775.517 kb on - strandat 775.517 kb on - strandat 775.517 kb on - strandat 775.522 kb on - strandat 775.623 kb on + strandat 775.623 kb on + strandat 775.624 kb on - strand, within Ga0059261_0746at 775.636 kb on + strand, within Ga0059261_0746at 775.636 kb on + strand, within Ga0059261_0746at 775.651 kb on + strand, within Ga0059261_0746at 775.651 kb on + strand, within Ga0059261_0746at 775.681 kb on + strand, within Ga0059261_0746at 775.682 kb on - strand, within Ga0059261_0746at 775.682 kb on - strand, within Ga0059261_0746at 775.927 kb on + strand, within Ga0059261_0746at 775.928 kb on - strand, within Ga0059261_0746at 775.928 kb on - strand, within Ga0059261_0746at 775.930 kb on - strand, within Ga0059261_0746at 776.041 kb on + strand, within Ga0059261_0746at 776.099 kb on - strand, within Ga0059261_0746at 776.125 kb on + strand, within Ga0059261_0746at 776.125 kb on + strand, within Ga0059261_0746at 776.125 kb on + strand, within Ga0059261_0746at 776.206 kb on + strand, within Ga0059261_0746at 776.207 kb on - strand, within Ga0059261_0746at 776.207 kb on - strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.332 kb on - strand, within Ga0059261_0746at 776.444 kb on + strandat 776.444 kb on + strandat 776.511 kb on + strandat 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 777.233 kb on + strandat 777.270 kb on + strandat 777.270 kb on + strandat 777.270 kb on + strandat 777.343 kb on + strandat 777.343 kb on + strandat 777.344 kb on - strandat 777.344 kb on - strandat 777.344 kb on - strandat 777.372 kb on + strandat 777.372 kb on + strandat 777.372 kb on + strandat 777.372 kb on + strandat 777.373 kb on - strandat 777.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.002 mg/ml
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774,887 - +0.5
774,887 - +0.6
775,008 + Ga0059261_0745 0.24 -0.3
775,009 - Ga0059261_0745 0.24 +0.7
775,063 + Ga0059261_0745 0.33 +0.7
775,063 + +0.9
775,064 - Ga0059261_0745 0.33 +0.4
775,064 - Ga0059261_0745 0.33 -0.0
775,078 + Ga0059261_0745 0.36 -1.7
775,426 + +0.1
775,426 + -0.2
775,451 + +0.2
775,451 + +0.3
775,451 + +0.6
775,452 - +0.4
775,452 - +1.9
775,482 + -0.3
775,483 - +0.7
775,516 + -0.3
775,516 + -0.2
775,517 - +0.9
775,517 - -1.1
775,517 - +1.6
775,517 - -0.1
775,517 - -1.4
775,517 - +0.9
775,522 - +1.0
775,623 + +1.7
775,623 + -1.5
775,624 - Ga0059261_0746 0.10 +0.0
775,636 + Ga0059261_0746 0.11 -1.2
775,636 + Ga0059261_0746 0.11 +0.3
775,651 + Ga0059261_0746 0.13 +1.2
775,651 + Ga0059261_0746 0.13 -0.1
775,681 + Ga0059261_0746 0.16 -0.2
775,682 - Ga0059261_0746 0.16 +0.3
775,682 - Ga0059261_0746 0.16 +0.6
775,927 + Ga0059261_0746 0.44 -1.8
775,928 - Ga0059261_0746 0.44 +0.6
775,928 - Ga0059261_0746 0.44 +0.8
775,930 - Ga0059261_0746 0.44 +0.6
776,041 + Ga0059261_0746 0.56 +0.5
776,099 - Ga0059261_0746 0.63 -0.2
776,125 + Ga0059261_0746 0.66 -0.5
776,125 + Ga0059261_0746 0.66 -1.2
776,125 + Ga0059261_0746 0.66 -0.2
776,206 + Ga0059261_0746 0.75 -0.5
776,207 - Ga0059261_0746 0.75 -0.6
776,207 - Ga0059261_0746 0.75 +0.2
776,281 + Ga0059261_0746 0.83 -0.4
776,281 + Ga0059261_0746 0.83 -0.7
776,281 + Ga0059261_0746 0.83 -2.9
776,281 + Ga0059261_0746 0.83 -0.4
776,281 + Ga0059261_0746 0.83 +1.1
776,281 + Ga0059261_0746 0.83 +0.3
776,282 - Ga0059261_0746 0.83 +0.1
776,282 - Ga0059261_0746 0.83 -0.2
776,282 - Ga0059261_0746 0.83 -0.5
776,282 - Ga0059261_0746 0.83 +1.2
776,282 - Ga0059261_0746 0.83 +0.2
776,282 - Ga0059261_0746 0.83 -0.3
776,332 - Ga0059261_0746 0.89 +0.1
776,444 + -1.2
776,444 + -0.7
776,511 + +0.6
776,745 + Ga0059261_0747 0.42 +0.9
776,745 + Ga0059261_0747 0.42 -0.2
776,745 + Ga0059261_0747 0.42 +1.2
776,745 + Ga0059261_0747 0.42 +0.7
776,745 + Ga0059261_0747 0.42 +0.1
776,745 + Ga0059261_0747 0.42 +0.2
776,745 + Ga0059261_0747 0.42 -0.3
776,745 + Ga0059261_0747 0.42 -1.4
776,745 + Ga0059261_0747 0.42 -0.1
777,233 + +0.3
777,270 + -0.3
777,270 + -0.1
777,270 + +0.0
777,343 + -0.7
777,343 + +1.3
777,344 - +0.5
777,344 - +0.4
777,344 - +0.9
777,372 + -0.9
777,372 + -0.4
777,372 + -0.6
777,372 + +0.0
777,373 - -0.7
777,373 - +0.6

Or see this region's nucleotide sequence