Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0651

Experiment: Tetracycline 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0649 and Ga0059261_0650 overlap by 1 nucleotidesGa0059261_0650 and Ga0059261_0651 are separated by 107 nucleotidesGa0059261_0651 and Ga0059261_0652 overlap by 1 nucleotides Ga0059261_0649: Ga0059261_0649 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 689,386 to 690,795 _0649 Ga0059261_0650: Ga0059261_0650 - Negative regulator of beta-lactamase expression, at 690,795 to 691,502 _0650 Ga0059261_0651: Ga0059261_0651 - Methylase of chemotaxis methyl-accepting proteins, at 691,610 to 692,467 _0651 Ga0059261_0652: Ga0059261_0652 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 692,467 to 693,528 _0652 Position (kb) 691 692 693Strain fitness (log2 ratio) -2 -1 0 1 2at 690.760 kb on - strandat 690.934 kb on + strand, within Ga0059261_0650at 691.411 kb on + strand, within Ga0059261_0650at 691.411 kb on + strand, within Ga0059261_0650at 691.412 kb on - strand, within Ga0059261_0650at 691.412 kb on - strand, within Ga0059261_0650at 691.653 kb on + strandat 691.653 kb on + strandat 691.653 kb on + strandat 691.653 kb on + strandat 691.653 kb on + strandat 691.654 kb on - strandat 691.654 kb on - strandat 691.778 kb on - strand, within Ga0059261_0651at 691.797 kb on + strand, within Ga0059261_0651at 691.797 kb on + strand, within Ga0059261_0651at 691.797 kb on + strand, within Ga0059261_0651at 691.797 kb on + strand, within Ga0059261_0651at 691.798 kb on - strand, within Ga0059261_0651at 691.798 kb on - strand, within Ga0059261_0651at 691.798 kb on - strand, within Ga0059261_0651at 692.137 kb on + strand, within Ga0059261_0651at 692.137 kb on + strand, within Ga0059261_0651at 692.137 kb on + strand, within Ga0059261_0651at 692.138 kb on - strand, within Ga0059261_0651at 692.138 kb on - strand, within Ga0059261_0651at 692.138 kb on - strand, within Ga0059261_0651at 692.314 kb on + strand, within Ga0059261_0651at 692.314 kb on + strand, within Ga0059261_0651at 692.315 kb on - strand, within Ga0059261_0651at 692.315 kb on - strand, within Ga0059261_0651at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.847 kb on + strand, within Ga0059261_0652at 692.847 kb on + strand, within Ga0059261_0652at 692.847 kb on + strand, within Ga0059261_0652at 692.885 kb on - strand, within Ga0059261_0652at 692.906 kb on + strand, within Ga0059261_0652at 692.907 kb on - strand, within Ga0059261_0652at 693.172 kb on - strand, within Ga0059261_0652at 693.172 kb on - strand, within Ga0059261_0652

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.002 mg/ml
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690,760 - -0.6
690,934 + Ga0059261_0650 0.20 +1.3
691,411 + Ga0059261_0650 0.87 -0.1
691,411 + Ga0059261_0650 0.87 +0.9
691,412 - Ga0059261_0650 0.87 +0.6
691,412 - Ga0059261_0650 0.87 -1.7
691,653 + -0.6
691,653 + +1.9
691,653 + +0.7
691,653 + +0.2
691,653 + -0.6
691,654 - -0.5
691,654 - -0.4
691,778 - Ga0059261_0651 0.20 +0.0
691,797 + Ga0059261_0651 0.22 -0.6
691,797 + Ga0059261_0651 0.22 -1.2
691,797 + Ga0059261_0651 0.22 +0.6
691,797 + Ga0059261_0651 0.22 -1.1
691,798 - Ga0059261_0651 0.22 -1.0
691,798 - Ga0059261_0651 0.22 -2.3
691,798 - Ga0059261_0651 0.22 -1.1
692,137 + Ga0059261_0651 0.61 -0.1
692,137 + Ga0059261_0651 0.61 -0.5
692,137 + Ga0059261_0651 0.61 -0.7
692,138 - Ga0059261_0651 0.62 -0.9
692,138 - Ga0059261_0651 0.62 +1.5
692,138 - Ga0059261_0651 0.62 -0.3
692,314 + Ga0059261_0651 0.82 +0.3
692,314 + Ga0059261_0651 0.82 +0.3
692,315 - Ga0059261_0651 0.82 +1.2
692,315 - Ga0059261_0651 0.82 +0.1
692,768 + Ga0059261_0652 0.28 -0.0
692,768 + Ga0059261_0652 0.28 +0.3
692,768 + Ga0059261_0652 0.28 -0.5
692,768 + Ga0059261_0652 0.28 +0.2
692,768 + Ga0059261_0652 0.28 -2.4
692,768 + Ga0059261_0652 0.28 -1.4
692,768 + Ga0059261_0652 0.28 -0.2
692,768 + Ga0059261_0652 0.28 +0.3
692,768 + Ga0059261_0652 0.28 +0.6
692,768 + Ga0059261_0652 0.28 -1.2
692,769 - Ga0059261_0652 0.28 -1.2
692,769 - Ga0059261_0652 0.28 -0.6
692,769 - Ga0059261_0652 0.28 -1.5
692,769 - Ga0059261_0652 0.28 +0.2
692,769 - Ga0059261_0652 0.28 -1.2
692,769 - Ga0059261_0652 0.28 +1.5
692,769 - Ga0059261_0652 0.28 +1.3
692,769 - Ga0059261_0652 0.28 -0.3
692,769 - Ga0059261_0652 0.28 +0.0
692,771 + Ga0059261_0652 0.29 +0.1
692,771 + Ga0059261_0652 0.29 +1.1
692,771 + Ga0059261_0652 0.29 +1.6
692,771 + Ga0059261_0652 0.29 +0.4
692,771 + Ga0059261_0652 0.29 +0.4
692,771 + Ga0059261_0652 0.29 -1.6
692,771 + Ga0059261_0652 0.29 -0.6
692,771 + Ga0059261_0652 0.29 -0.7
692,772 - Ga0059261_0652 0.29 -0.1
692,772 - Ga0059261_0652 0.29 -0.5
692,772 - Ga0059261_0652 0.29 -1.9
692,772 - Ga0059261_0652 0.29 +0.2
692,772 - Ga0059261_0652 0.29 +0.4
692,772 - Ga0059261_0652 0.29 +1.2
692,772 - Ga0059261_0652 0.29 -0.7
692,847 + Ga0059261_0652 0.36 -0.7
692,847 + Ga0059261_0652 0.36 +0.6
692,847 + Ga0059261_0652 0.36 -0.6
692,885 - Ga0059261_0652 0.39 -0.7
692,906 + Ga0059261_0652 0.41 -1.9
692,907 - Ga0059261_0652 0.41 -0.2
693,172 - Ga0059261_0652 0.66 +0.6
693,172 - Ga0059261_0652 0.66 +0.3

Or see this region's nucleotide sequence