Experiment: Tetracycline 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0556 and Ga0059261_0557 overlap by 4 nucleotides Ga0059261_0557 and Ga0059261_0558 are separated by 38 nucleotides Ga0059261_0558 and Ga0059261_0559 overlap by 4 nucleotides
Ga0059261_0556: Ga0059261_0556 - Signal transduction histidine kinase, at 570,585 to 571,946
_0556
Ga0059261_0557: Ga0059261_0557 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 571,943 to 572,680
_0557
Ga0059261_0558: Ga0059261_0558 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 572,719 to 574,119
_0558
Ga0059261_0559: Ga0059261_0559 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 574,116 to 577,244
_0559
Position (kb) 572
573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 571.811 kb on - strand at 571.824 kb on + strand at 571.824 kb on + strand at 571.824 kb on + strand at 571.825 kb on - strand at 571.825 kb on - strand at 571.825 kb on - strand at 571.868 kb on + strand at 571.869 kb on - strand at 571.974 kb on + strand at 571.974 kb on + strand at 571.975 kb on - strand at 571.975 kb on - strand at 571.975 kb on - strand at 572.349 kb on + strand, within Ga0059261_0557 at 572.349 kb on + strand, within Ga0059261_0557 at 572.349 kb on + strand, within Ga0059261_0557 at 572.349 kb on + strand, within Ga0059261_0557 at 572.349 kb on + strand, within Ga0059261_0557 at 572.350 kb on - strand, within Ga0059261_0557 at 572.350 kb on - strand, within Ga0059261_0557 at 572.350 kb on - strand, within Ga0059261_0557 at 572.568 kb on + strand, within Ga0059261_0557 at 572.568 kb on + strand, within Ga0059261_0557 at 572.568 kb on + strand, within Ga0059261_0557 at 572.569 kb on - strand at 572.569 kb on - strand, within Ga0059261_0557 at 572.685 kb on + strand at 572.686 kb on - strand at 572.686 kb on - strand at 572.687 kb on + strand at 572.688 kb on - strand at 572.688 kb on - strand at 572.688 kb on - strand at 572.751 kb on - strand at 572.760 kb on + strand at 572.813 kb on + strand at 572.813 kb on + strand at 572.813 kb on + strand at 572.814 kb on - strand at 572.814 kb on - strand at 572.814 kb on - strand at 572.981 kb on + strand, within Ga0059261_0558 at 572.981 kb on + strand, within Ga0059261_0558 at 572.981 kb on + strand, within Ga0059261_0558 at 572.981 kb on + strand, within Ga0059261_0558 at 572.982 kb on - strand, within Ga0059261_0558 at 573.005 kb on + strand at 573.006 kb on - strand, within Ga0059261_0558 at 573.020 kb on + strand, within Ga0059261_0558 at 573.021 kb on - strand, within Ga0059261_0558 at 573.021 kb on - strand, within Ga0059261_0558 at 573.021 kb on - strand, within Ga0059261_0558 at 573.041 kb on + strand, within Ga0059261_0558 at 573.410 kb on + strand, within Ga0059261_0558 at 573.411 kb on - strand, within Ga0059261_0558 at 573.584 kb on + strand, within Ga0059261_0558 at 573.584 kb on + strand, within Ga0059261_0558 at 573.585 kb on - strand, within Ga0059261_0558 at 573.585 kb on - strand, within Ga0059261_0558 at 573.651 kb on - strand, within Ga0059261_0558 at 573.651 kb on - strand, within Ga0059261_0558 at 573.651 kb on - strand, within Ga0059261_0558 at 573.651 kb on - strand, within Ga0059261_0558 at 573.845 kb on + strand, within Ga0059261_0558 at 573.845 kb on + strand, within Ga0059261_0558 at 573.846 kb on - strand, within Ga0059261_0558 at 573.846 kb on - strand, within Ga0059261_0558 at 573.992 kb on + strand at 573.992 kb on + strand at 573.992 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.026 kb on - strand at 574.026 kb on - strand at 574.026 kb on - strand at 574.026 kb on - strand at 574.026 kb on - strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.192 kb on + strand at 574.192 kb on + strand at 574.192 kb on + strand at 574.192 kb on + strand at 574.193 kb on - strand at 574.474 kb on + strand, within Ga0059261_0559 at 574.474 kb on + strand, within Ga0059261_0559 at 574.474 kb on + strand, within Ga0059261_0559 at 574.474 kb on + strand, within Ga0059261_0559 at 574.474 kb on + strand, within Ga0059261_0559 at 574.474 kb on + strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.576 kb on + strand, within Ga0059261_0559 at 574.577 kb on - strand, within Ga0059261_0559 at 574.577 kb on - strand, within Ga0059261_0559 at 574.577 kb on - strand, within Ga0059261_0559 at 574.621 kb on + strand, within Ga0059261_0559 at 574.621 kb on + strand, within Ga0059261_0559 at 574.622 kb on - strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.749 kb on - strand, within Ga0059261_0559 at 574.777 kb on + strand, within Ga0059261_0559 at 574.777 kb on + strand, within Ga0059261_0559 at 574.778 kb on - strand at 574.778 kb on - strand, within Ga0059261_0559 at 574.778 kb on - strand, within Ga0059261_0559 at 574.778 kb on - strand, within Ga0059261_0559 at 574.778 kb on - strand, within Ga0059261_0559 at 574.939 kb on + strand, within Ga0059261_0559 at 574.940 kb on - strand, within Ga0059261_0559 at 574.940 kb on - strand, within Ga0059261_0559 at 574.940 kb on - strand, within Ga0059261_0559 at 574.940 kb on - strand, within Ga0059261_0559 at 574.979 kb on + strand, within Ga0059261_0559 at 574.980 kb on - strand, within Ga0059261_0559 at 574.980 kb on - strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.097 kb on - strand, within Ga0059261_0559 at 575.097 kb on - strand, within Ga0059261_0559 at 575.097 kb on - strand, within Ga0059261_0559 at 575.097 kb on - strand, within Ga0059261_0559 at 575.097 kb on - strand, within Ga0059261_0559
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.002 mg/ml remove 571,811 - -0.1 571,824 + +0.1 571,824 + +0.3 571,824 + -1.4 571,825 - +0.0 571,825 - -0.4 571,825 - -0.9 571,868 + -1.8 571,869 - +0.9 571,974 + -0.2 571,974 + -0.3 571,975 - -0.1 571,975 - -0.1 571,975 - -0.4 572,349 + Ga0059261_0557 0.55 -0.8 572,349 + Ga0059261_0557 0.55 +1.3 572,349 + Ga0059261_0557 0.55 +0.3 572,349 + Ga0059261_0557 0.55 -0.9 572,349 + Ga0059261_0557 0.55 +1.6 572,350 - Ga0059261_0557 0.55 +0.4 572,350 - Ga0059261_0557 0.55 -0.1 572,350 - Ga0059261_0557 0.55 -0.3 572,568 + Ga0059261_0557 0.85 -0.6 572,568 + Ga0059261_0557 0.85 -0.1 572,568 + Ga0059261_0557 0.85 -0.3 572,569 - +0.9 572,569 - Ga0059261_0557 0.85 +0.1 572,685 + -0.5 572,686 - -0.1 572,686 - -0.0 572,687 + +0.9 572,688 - +1.1 572,688 - -0.1 572,688 - +0.8 572,751 - +0.8 572,760 + +0.1 572,813 + -1.9 572,813 + -0.6 572,813 + +0.1 572,814 - +0.3 572,814 - +0.7 572,814 - +0.2 572,981 + Ga0059261_0558 0.19 -0.0 572,981 + Ga0059261_0558 0.19 -0.4 572,981 + Ga0059261_0558 0.19 +0.4 572,981 + Ga0059261_0558 0.19 -0.7 572,982 - Ga0059261_0558 0.19 -0.8 573,005 + +2.5 573,006 - Ga0059261_0558 0.20 -0.1 573,020 + Ga0059261_0558 0.21 -0.7 573,021 - Ga0059261_0558 0.22 +0.6 573,021 - Ga0059261_0558 0.22 -0.3 573,021 - Ga0059261_0558 0.22 -2.6 573,041 + Ga0059261_0558 0.23 +0.0 573,410 + Ga0059261_0558 0.49 -0.1 573,411 - Ga0059261_0558 0.49 -1.4 573,584 + Ga0059261_0558 0.62 +0.0 573,584 + Ga0059261_0558 0.62 -1.1 573,585 - Ga0059261_0558 0.62 -0.3 573,585 - Ga0059261_0558 0.62 -0.6 573,651 - Ga0059261_0558 0.67 +0.3 573,651 - Ga0059261_0558 0.67 -0.1 573,651 - Ga0059261_0558 0.67 +0.2 573,651 - Ga0059261_0558 0.67 -0.2 573,845 + Ga0059261_0558 0.80 -0.1 573,845 + Ga0059261_0558 0.80 -1.1 573,846 - Ga0059261_0558 0.80 -0.5 573,846 - Ga0059261_0558 0.80 -0.1 573,992 + +0.8 573,992 + +0.9 573,992 + +0.4 574,025 + +1.0 574,025 + +2.9 574,025 + -0.1 574,025 + +0.0 574,025 + -0.2 574,025 + -0.4 574,025 + +0.5 574,026 - -0.9 574,026 - -1.2 574,026 - -1.9 574,026 - -1.0 574,026 - +0.2 574,046 + +0.4 574,046 + -0.7 574,046 + -0.1 574,046 + -1.8 574,046 + +0.1 574,046 + +0.2 574,046 + -0.7 574,046 + -0.1 574,046 + +0.5 574,046 + -0.9 574,046 + +1.8 574,046 + +0.2 574,046 + +1.4 574,046 + +0.9 574,046 + +0.5 574,047 - -1.1 574,047 - +1.7 574,047 - -2.1 574,047 - -0.0 574,047 - -0.1 574,047 - +0.0 574,047 - -0.3 574,047 - -0.3 574,047 - +0.4 574,192 + -1.2 574,192 + -0.7 574,192 + -0.5 574,192 + -0.8 574,193 - -0.1 574,474 + Ga0059261_0559 0.11 +1.0 574,474 + Ga0059261_0559 0.11 -0.2 574,474 + Ga0059261_0559 0.11 +0.1 574,474 + Ga0059261_0559 0.11 +1.9 574,474 + Ga0059261_0559 0.11 -0.1 574,474 + Ga0059261_0559 0.11 +0.5 574,475 - Ga0059261_0559 0.11 -3.0 574,475 - Ga0059261_0559 0.11 +0.6 574,475 - Ga0059261_0559 0.11 +0.2 574,475 - Ga0059261_0559 0.11 +0.9 574,475 - Ga0059261_0559 0.11 -0.8 574,475 - Ga0059261_0559 0.11 -0.7 574,475 - Ga0059261_0559 0.11 +0.9 574,475 - Ga0059261_0559 0.11 -0.4 574,576 + Ga0059261_0559 0.15 +1.3 574,577 - Ga0059261_0559 0.15 -0.1 574,577 - Ga0059261_0559 0.15 -0.6 574,577 - Ga0059261_0559 0.15 -0.1 574,621 + Ga0059261_0559 0.16 -0.3 574,621 + Ga0059261_0559 0.16 +0.5 574,622 - Ga0059261_0559 0.16 -0.9 574,681 + Ga0059261_0559 0.18 +1.5 574,681 + Ga0059261_0559 0.18 -0.1 574,681 + Ga0059261_0559 0.18 -0.6 574,681 + -0.1 574,681 + Ga0059261_0559 0.18 -0.2 574,681 + Ga0059261_0559 0.18 -1.3 574,681 + Ga0059261_0559 0.18 +0.2 574,681 + Ga0059261_0559 0.18 +0.4 574,682 - Ga0059261_0559 0.18 -0.2 574,682 - Ga0059261_0559 0.18 -1.4 574,682 - Ga0059261_0559 0.18 +1.2 574,682 - Ga0059261_0559 0.18 -0.6 574,682 - Ga0059261_0559 0.18 -1.3 574,682 - Ga0059261_0559 0.18 -0.2 574,749 - Ga0059261_0559 0.20 -0.2 574,777 + Ga0059261_0559 0.21 -0.9 574,777 + Ga0059261_0559 0.21 +0.2 574,778 - -0.7 574,778 - Ga0059261_0559 0.21 -0.3 574,778 - Ga0059261_0559 0.21 -0.1 574,778 - Ga0059261_0559 0.21 +0.3 574,778 - Ga0059261_0559 0.21 +0.4 574,939 + Ga0059261_0559 0.26 -0.7 574,940 - Ga0059261_0559 0.26 -2.4 574,940 - Ga0059261_0559 0.26 +0.3 574,940 - Ga0059261_0559 0.26 -0.7 574,940 - Ga0059261_0559 0.26 +0.5 574,979 + Ga0059261_0559 0.28 -1.2 574,980 - Ga0059261_0559 0.28 -0.4 574,980 - Ga0059261_0559 0.28 +0.5 574,981 + Ga0059261_0559 0.28 -1.1 574,981 + Ga0059261_0559 0.28 -0.4 574,981 + Ga0059261_0559 0.28 -1.2 574,981 + Ga0059261_0559 0.28 +0.9 574,981 + Ga0059261_0559 0.28 +0.4 574,981 + Ga0059261_0559 0.28 +0.2 574,981 + Ga0059261_0559 0.28 -0.9 574,981 + Ga0059261_0559 0.28 +0.5 574,981 + Ga0059261_0559 0.28 +0.8 574,981 + Ga0059261_0559 0.28 -0.3 574,981 + Ga0059261_0559 0.28 +0.0 574,981 + Ga0059261_0559 0.28 -0.4 574,982 - Ga0059261_0559 0.28 +0.1 574,982 - Ga0059261_0559 0.28 +1.2 574,982 - Ga0059261_0559 0.28 -0.7 574,982 - Ga0059261_0559 0.28 +0.6 574,982 - Ga0059261_0559 0.28 +0.1 574,982 - Ga0059261_0559 0.28 -0.0 574,982 - Ga0059261_0559 0.28 -0.0 574,982 - Ga0059261_0559 0.28 +0.3 574,982 - Ga0059261_0559 0.28 +0.0 574,982 - Ga0059261_0559 0.28 -0.0 574,982 - Ga0059261_0559 0.28 -0.0 575,096 + Ga0059261_0559 0.31 +1.5 575,096 + Ga0059261_0559 0.31 -1.1 575,096 + Ga0059261_0559 0.31 +1.7 575,096 + Ga0059261_0559 0.31 +1.4 575,096 + Ga0059261_0559 0.31 +0.7 575,096 + Ga0059261_0559 0.31 -1.4 575,097 - Ga0059261_0559 0.31 -0.4 575,097 - Ga0059261_0559 0.31 +0.1 575,097 - Ga0059261_0559 0.31 -1.7 575,097 - Ga0059261_0559 0.31 -1.6 575,097 - Ga0059261_0559 0.31 +0.0
Or see this region's nucleotide sequence