Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0508

Experiment: Tetracycline 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0506 and Ga0059261_0507 are separated by 24 nucleotidesGa0059261_0507 and Ga0059261_0508 overlap by 4 nucleotidesGa0059261_0508 and Ga0059261_0509 overlap by 4 nucleotides Ga0059261_0506: Ga0059261_0506 - Arylsulfatase A and related enzymes, at 505,066 to 506,664 _0506 Ga0059261_0507: Ga0059261_0507 - maleylacetoacetate isomerase, at 506,689 to 507,327 _0507 Ga0059261_0508: Ga0059261_0508 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 507,324 to 508,022 _0508 Ga0059261_0509: Ga0059261_0509 - gentisate 1,2-dioxygenase, at 508,019 to 509,071 _0509 Position (kb) 507 508 509Strain fitness (log2 ratio) -2 -1 0 1 2 3at 506.393 kb on + strand, within Ga0059261_0506at 506.393 kb on + strand, within Ga0059261_0506at 506.393 kb on + strand, within Ga0059261_0506at 506.462 kb on + strand, within Ga0059261_0506at 506.462 kb on + strand, within Ga0059261_0506at 506.463 kb on - strand, within Ga0059261_0506at 506.682 kb on + strandat 506.682 kb on + strandat 506.683 kb on - strandat 506.683 kb on - strandat 507.008 kb on - strand, within Ga0059261_0507at 507.104 kb on + strand, within Ga0059261_0507at 507.104 kb on + strand, within Ga0059261_0507at 507.104 kb on + strand, within Ga0059261_0507at 507.104 kb on + strand, within Ga0059261_0507at 507.104 kb on + strand, within Ga0059261_0507at 507.104 kb on + strand, within Ga0059261_0507at 507.105 kb on - strand, within Ga0059261_0507at 507.105 kb on - strand, within Ga0059261_0507at 507.192 kb on - strand, within Ga0059261_0507at 507.192 kb on - strand, within Ga0059261_0507at 507.242 kb on + strand, within Ga0059261_0507at 507.242 kb on + strand, within Ga0059261_0507at 507.242 kb on + strand, within Ga0059261_0507at 507.242 kb on + strand, within Ga0059261_0507at 507.243 kb on - strand, within Ga0059261_0507at 507.243 kb on - strand, within Ga0059261_0507at 507.282 kb on - strandat 507.282 kb on - strandat 507.302 kb on + strandat 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strandat 507.436 kb on + strand, within Ga0059261_0508at 507.436 kb on + strandat 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.437 kb on - strand, within Ga0059261_0508at 507.463 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.478 kb on + strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.479 kb on - strand, within Ga0059261_0508at 507.718 kb on + strandat 507.718 kb on + strand, within Ga0059261_0508at 507.718 kb on + strand, within Ga0059261_0508at 507.718 kb on + strand, within Ga0059261_0508at 507.719 kb on - strand, within Ga0059261_0508at 507.719 kb on - strand, within Ga0059261_0508at 507.719 kb on - strand, within Ga0059261_0508at 507.719 kb on - strandat 507.719 kb on - strand, within Ga0059261_0508at 507.793 kb on + strand, within Ga0059261_0508at 507.794 kb on - strand, within Ga0059261_0508at 507.794 kb on - strand, within Ga0059261_0508at 507.794 kb on - strand, within Ga0059261_0508at 507.794 kb on - strand, within Ga0059261_0508at 507.820 kb on + strand, within Ga0059261_0508at 507.846 kb on + strand, within Ga0059261_0508at 507.847 kb on - strand, within Ga0059261_0508at 507.925 kb on + strand, within Ga0059261_0508at 507.926 kb on - strand, within Ga0059261_0508at 507.926 kb on - strand, within Ga0059261_0508at 507.926 kb on - strand, within Ga0059261_0508at 507.926 kb on - strand, within Ga0059261_0508at 507.988 kb on + strandat 507.988 kb on + strandat 507.989 kb on - strandat 507.989 kb on - strandat 507.989 kb on - strandat 508.399 kb on - strand, within Ga0059261_0509at 508.405 kb on - strand, within Ga0059261_0509at 508.476 kb on + strand, within Ga0059261_0509at 508.476 kb on + strandat 508.476 kb on + strand, within Ga0059261_0509at 508.476 kb on + strand, within Ga0059261_0509at 508.477 kb on - strand, within Ga0059261_0509at 508.477 kb on - strand, within Ga0059261_0509at 508.696 kb on + strand, within Ga0059261_0509at 508.697 kb on - strand, within Ga0059261_0509at 508.697 kb on - strand, within Ga0059261_0509at 508.697 kb on - strand, within Ga0059261_0509at 508.697 kb on - strand, within Ga0059261_0509at 508.697 kb on - strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.698 kb on + strand, within Ga0059261_0509at 508.699 kb on - strand, within Ga0059261_0509at 508.699 kb on - strand, within Ga0059261_0509at 508.699 kb on - strand, within Ga0059261_0509at 508.794 kb on + strand, within Ga0059261_0509at 508.794 kb on + strand, within Ga0059261_0509at 508.794 kb on + strand, within Ga0059261_0509at 508.794 kb on + strand, within Ga0059261_0509at 508.794 kb on + strand, within Ga0059261_0509at 508.795 kb on - strand, within Ga0059261_0509at 508.795 kb on - strand, within Ga0059261_0509at 508.902 kb on + strand, within Ga0059261_0509at 508.903 kb on - strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.920 kb on + strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 508.921 kb on - strand, within Ga0059261_0509at 509.022 kb on + strandat 509.022 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.002 mg/ml
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506,393 + Ga0059261_0506 0.83 +0.3
506,393 + Ga0059261_0506 0.83 -2.4
506,393 + Ga0059261_0506 0.83 -0.2
506,462 + Ga0059261_0506 0.87 +0.7
506,462 + Ga0059261_0506 0.87 -0.2
506,463 - Ga0059261_0506 0.87 +2.1
506,682 + +1.4
506,682 + -0.3
506,683 - +0.4
506,683 - +0.6
507,008 - Ga0059261_0507 0.50 +0.1
507,104 + Ga0059261_0507 0.65 -0.4
507,104 + Ga0059261_0507 0.65 -2.3
507,104 + Ga0059261_0507 0.65 +2.9
507,104 + Ga0059261_0507 0.65 +0.0
507,104 + Ga0059261_0507 0.65 +0.0
507,104 + Ga0059261_0507 0.65 -1.1
507,105 - Ga0059261_0507 0.65 -0.2
507,105 - Ga0059261_0507 0.65 -2.6
507,192 - Ga0059261_0507 0.79 -0.6
507,192 - Ga0059261_0507 0.79 +0.1
507,242 + Ga0059261_0507 0.87 -0.3
507,242 + Ga0059261_0507 0.87 +0.1
507,242 + Ga0059261_0507 0.87 -0.0
507,242 + Ga0059261_0507 0.87 +0.0
507,243 - Ga0059261_0507 0.87 -0.2
507,243 - Ga0059261_0507 0.87 +0.0
507,282 - -0.9
507,282 - -1.1
507,302 + +0.8
507,436 + Ga0059261_0508 0.16 +1.2
507,436 + Ga0059261_0508 0.16 +0.6
507,436 + Ga0059261_0508 0.16 -0.3
507,436 + Ga0059261_0508 0.16 -0.8
507,436 + Ga0059261_0508 0.16 +0.5
507,436 + Ga0059261_0508 0.16 +0.6
507,436 + Ga0059261_0508 0.16 -1.1
507,436 + +0.9
507,436 + Ga0059261_0508 0.16 +0.2
507,436 + +0.1
507,437 - Ga0059261_0508 0.16 +0.3
507,437 - Ga0059261_0508 0.16 -0.3
507,437 - Ga0059261_0508 0.16 -0.1
507,437 - Ga0059261_0508 0.16 -0.1
507,437 - Ga0059261_0508 0.16 -0.1
507,437 - Ga0059261_0508 0.16 +0.6
507,437 - Ga0059261_0508 0.16 +0.8
507,437 - Ga0059261_0508 0.16 +0.5
507,437 - Ga0059261_0508 0.16 +0.1
507,437 - Ga0059261_0508 0.16 -0.3
507,437 - Ga0059261_0508 0.16 +0.2
507,463 + Ga0059261_0508 0.20 +0.3
507,478 + Ga0059261_0508 0.22 +0.1
507,478 + Ga0059261_0508 0.22 +0.3
507,478 + Ga0059261_0508 0.22 -1.1
507,478 + Ga0059261_0508 0.22 +0.0
507,478 + Ga0059261_0508 0.22 +0.6
507,478 + Ga0059261_0508 0.22 +0.9
507,479 - Ga0059261_0508 0.22 +0.2
507,479 - Ga0059261_0508 0.22 -0.8
507,479 - Ga0059261_0508 0.22 +0.0
507,479 - Ga0059261_0508 0.22 +0.1
507,479 - Ga0059261_0508 0.22 -0.9
507,479 - Ga0059261_0508 0.22 +0.2
507,479 - Ga0059261_0508 0.22 -0.9
507,479 - Ga0059261_0508 0.22 +0.4
507,718 + +0.9
507,718 + Ga0059261_0508 0.56 -0.6
507,718 + Ga0059261_0508 0.56 +0.6
507,718 + Ga0059261_0508 0.56 -0.4
507,719 - Ga0059261_0508 0.57 +0.6
507,719 - Ga0059261_0508 0.57 +0.9
507,719 - Ga0059261_0508 0.57 -0.4
507,719 - -1.1
507,719 - Ga0059261_0508 0.57 -0.0
507,793 + Ga0059261_0508 0.67 +0.4
507,794 - Ga0059261_0508 0.67 +0.6
507,794 - Ga0059261_0508 0.67 +0.1
507,794 - Ga0059261_0508 0.67 -0.5
507,794 - Ga0059261_0508 0.67 -0.2
507,820 + Ga0059261_0508 0.71 +0.6
507,846 + Ga0059261_0508 0.75 -1.4
507,847 - Ga0059261_0508 0.75 -0.3
507,925 + Ga0059261_0508 0.86 +1.0
507,926 - Ga0059261_0508 0.86 +0.4
507,926 - Ga0059261_0508 0.86 -0.9
507,926 - Ga0059261_0508 0.86 +3.2
507,926 - Ga0059261_0508 0.86 +0.1
507,988 + +0.1
507,988 + -1.4
507,989 - -1.1
507,989 - -0.1
507,989 - +1.0
508,399 - Ga0059261_0509 0.36 -1.4
508,405 - Ga0059261_0509 0.37 -0.2
508,476 + Ga0059261_0509 0.43 +0.4
508,476 + -1.1
508,476 + Ga0059261_0509 0.43 -0.1
508,476 + Ga0059261_0509 0.43 +2.5
508,477 - Ga0059261_0509 0.43 +0.6
508,477 - Ga0059261_0509 0.43 -0.3
508,696 + Ga0059261_0509 0.64 -0.3
508,697 - Ga0059261_0509 0.64 +0.2
508,697 - Ga0059261_0509 0.64 -0.1
508,697 - Ga0059261_0509 0.64 -1.4
508,697 - Ga0059261_0509 0.64 +0.1
508,697 - Ga0059261_0509 0.64 +2.1
508,698 + Ga0059261_0509 0.64 +0.6
508,698 + Ga0059261_0509 0.64 +0.6
508,698 + Ga0059261_0509 0.64 -0.2
508,698 + Ga0059261_0509 0.64 -0.3
508,698 + Ga0059261_0509 0.64 -0.2
508,698 + Ga0059261_0509 0.64 +0.7
508,699 - Ga0059261_0509 0.65 +0.9
508,699 - Ga0059261_0509 0.65 -0.6
508,699 - Ga0059261_0509 0.65 +1.2
508,794 + Ga0059261_0509 0.74 +0.8
508,794 + Ga0059261_0509 0.74 -0.9
508,794 + Ga0059261_0509 0.74 -1.8
508,794 + Ga0059261_0509 0.74 -0.1
508,794 + Ga0059261_0509 0.74 -0.4
508,795 - Ga0059261_0509 0.74 +0.3
508,795 - Ga0059261_0509 0.74 -1.9
508,902 + Ga0059261_0509 0.84 +0.5
508,903 - Ga0059261_0509 0.84 -0.7
508,920 + Ga0059261_0509 0.86 -0.8
508,920 + Ga0059261_0509 0.86 -0.1
508,920 + Ga0059261_0509 0.86 +1.5
508,920 + Ga0059261_0509 0.86 +0.1
508,920 + Ga0059261_0509 0.86 +0.9
508,920 + Ga0059261_0509 0.86 +0.2
508,920 + Ga0059261_0509 0.86 +0.2
508,920 + Ga0059261_0509 0.86 -0.3
508,920 + Ga0059261_0509 0.86 -0.1
508,920 + Ga0059261_0509 0.86 -0.6
508,921 - Ga0059261_0509 0.86 -0.5
508,921 - Ga0059261_0509 0.86 +0.1
508,921 - Ga0059261_0509 0.86 +0.7
508,921 - Ga0059261_0509 0.86 +0.3
508,921 - Ga0059261_0509 0.86 -0.6
508,921 - Ga0059261_0509 0.86 +0.0
508,921 - Ga0059261_0509 0.86 -1.2
508,921 - Ga0059261_0509 0.86 +0.8
509,022 + +1.2
509,022 + +0.2

Or see this region's nucleotide sequence