Experiment: Tetracycline 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0436 and Ga0059261_0437 overlap by 4 nucleotides Ga0059261_0437 and Ga0059261_0438 are separated by 961 nucleotides
Ga0059261_0436: Ga0059261_0436 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 421,380 to 424,559
_0436
Ga0059261_0437: Ga0059261_0437 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 424,556 to 426,010
_0437
Ga0059261_0438: Ga0059261_0438 - hypothetical protein, at 426,972 to 427,151
_0438
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.556 kb on - strand, within Ga0059261_0436 at 423.654 kb on + strand, within Ga0059261_0436 at 423.655 kb on - strand, within Ga0059261_0436 at 423.655 kb on - strand, within Ga0059261_0436 at 423.655 kb on - strand, within Ga0059261_0436 at 423.669 kb on + strand at 423.669 kb on + strand, within Ga0059261_0436 at 423.669 kb on + strand, within Ga0059261_0436 at 423.669 kb on + strand, within Ga0059261_0436 at 423.669 kb on + strand, within Ga0059261_0436 at 423.669 kb on + strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.670 kb on - strand, within Ga0059261_0436 at 423.702 kb on + strand, within Ga0059261_0436 at 423.702 kb on + strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.703 kb on - strand, within Ga0059261_0436 at 423.711 kb on + strand, within Ga0059261_0436 at 423.711 kb on + strand, within Ga0059261_0436 at 423.711 kb on + strand, within Ga0059261_0436 at 423.711 kb on + strand, within Ga0059261_0436 at 423.711 kb on + strand, within Ga0059261_0436 at 423.712 kb on - strand, within Ga0059261_0436 at 423.712 kb on - strand, within Ga0059261_0436 at 423.852 kb on + strand, within Ga0059261_0436 at 423.852 kb on + strand, within Ga0059261_0436 at 423.852 kb on + strand, within Ga0059261_0436 at 423.853 kb on - strand, within Ga0059261_0436 at 423.853 kb on - strand, within Ga0059261_0436 at 423.853 kb on - strand, within Ga0059261_0436 at 423.853 kb on - strand, within Ga0059261_0436 at 423.855 kb on - strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.023 kb on + strand, within Ga0059261_0436 at 424.024 kb on - strand, within Ga0059261_0436 at 424.024 kb on - strand, within Ga0059261_0436 at 424.024 kb on - strand at 424.074 kb on + strand, within Ga0059261_0436 at 424.074 kb on + strand, within Ga0059261_0436 at 424.074 kb on + strand, within Ga0059261_0436 at 424.074 kb on + strand, within Ga0059261_0436 at 424.075 kb on - strand, within Ga0059261_0436 at 424.075 kb on - strand, within Ga0059261_0436 at 424.075 kb on - strand, within Ga0059261_0436 at 424.075 kb on - strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.076 kb on + strand, within Ga0059261_0436 at 424.077 kb on - strand, within Ga0059261_0436 at 424.077 kb on - strand, within Ga0059261_0436 at 424.077 kb on - strand, within Ga0059261_0436 at 424.077 kb on - strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.172 kb on + strand, within Ga0059261_0436 at 424.173 kb on - strand, within Ga0059261_0436 at 424.173 kb on - strand, within Ga0059261_0436 at 424.173 kb on - strand, within Ga0059261_0436 at 424.173 kb on - strand, within Ga0059261_0436 at 424.173 kb on - strand, within Ga0059261_0436 at 424.173 kb on - strand at 424.473 kb on + strand at 424.474 kb on - strand at 424.474 kb on - strand at 424.474 kb on - strand at 424.474 kb on - strand at 424.474 kb on - strand at 424.474 kb on - strand at 424.631 kb on + strand at 424.631 kb on + strand at 424.631 kb on + strand at 424.631 kb on + strand at 424.631 kb on + strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.632 kb on - strand at 424.664 kb on + strand at 424.664 kb on + strand at 424.665 kb on - strand at 424.665 kb on - strand at 424.665 kb on - strand at 424.874 kb on + strand, within Ga0059261_0437 at 424.874 kb on + strand, within Ga0059261_0437 at 424.874 kb on + strand, within Ga0059261_0437 at 424.875 kb on - strand, within Ga0059261_0437 at 425.084 kb on + strand, within Ga0059261_0437 at 425.084 kb on + strand, within Ga0059261_0437 at 425.085 kb on - strand, within Ga0059261_0437 at 425.085 kb on - strand, within Ga0059261_0437 at 425.085 kb on - strand, within Ga0059261_0437 at 425.085 kb on - strand, within Ga0059261_0437 at 425.602 kb on + strand, within Ga0059261_0437 at 425.602 kb on + strand, within Ga0059261_0437 at 425.603 kb on - strand, within Ga0059261_0437 at 425.667 kb on - strand, within Ga0059261_0437 at 425.721 kb on - strand at 425.826 kb on - strand, within Ga0059261_0437 at 425.858 kb on + strand, within Ga0059261_0437 at 425.858 kb on + strand, within Ga0059261_0437 at 425.859 kb on - strand, within Ga0059261_0437 at 425.986 kb on + strand at 425.986 kb on + strand at 425.987 kb on - strand at 425.987 kb on - strand at 425.987 kb on - strand at 425.987 kb on - strand at 426.009 kb on - strand at 426.033 kb on + strand at 426.033 kb on + strand at 426.034 kb on - strand at 426.073 kb on + strand at 426.074 kb on - strand at 426.074 kb on - strand at 426.092 kb on + strand at 426.092 kb on + strand at 426.093 kb on - strand at 426.093 kb on - strand at 426.224 kb on + strand at 426.225 kb on - strand at 426.225 kb on - strand at 426.225 kb on - strand at 426.225 kb on - strand at 426.284 kb on + strand at 426.285 kb on - strand at 426.328 kb on + strand at 426.338 kb on + strand at 426.339 kb on - strand at 426.339 kb on - strand at 426.376 kb on + strand at 426.376 kb on + strand at 426.376 kb on + strand at 426.376 kb on + strand at 426.376 kb on + strand at 426.377 kb on - strand at 426.377 kb on - strand at 426.377 kb on - strand at 426.377 kb on - strand at 426.400 kb on - strand at 426.428 kb on + strand at 426.428 kb on + strand at 426.429 kb on - strand at 426.429 kb on - strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.431 kb on + strand at 426.432 kb on - strand at 426.432 kb on - strand at 426.432 kb on - strand at 426.432 kb on - strand at 426.432 kb on - strand at 426.659 kb on - strand at 426.716 kb on + strand at 426.716 kb on + strand at 426.716 kb on + strand at 426.717 kb on - strand at 426.717 kb on - strand at 426.717 kb on - strand at 426.724 kb on + strand at 426.724 kb on + strand at 426.775 kb on + strand at 426.776 kb on - strand at 426.776 kb on - strand at 426.776 kb on - strand at 426.780 kb on + strand at 426.780 kb on + strand at 426.781 kb on - strand at 426.888 kb on - strand at 426.973 kb on + strand at 426.973 kb on + strand at 426.974 kb on - strand at 426.974 kb on - strand at 426.974 kb on - strand at 426.974 kb on - strand at 426.974 kb on - strand at 426.974 kb on - strand at 426.975 kb on + strand at 426.975 kb on + strand at 426.975 kb on + strand at 426.975 kb on + strand at 426.976 kb on - strand at 426.976 kb on - strand at 426.976 kb on - strand at 426.976 kb on - strand at 427.007 kb on + strand, within Ga0059261_0438 at 427.007 kb on + strand, within Ga0059261_0438 at 427.007 kb on + strand, within Ga0059261_0438 at 427.007 kb on + strand, within Ga0059261_0438 at 427.008 kb on - strand, within Ga0059261_0438
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.002 mg/ml remove 423,556 - Ga0059261_0436 0.68 -1.5 423,556 - Ga0059261_0436 0.68 -0.0 423,556 - Ga0059261_0436 0.68 -0.1 423,556 - Ga0059261_0436 0.68 +1.1 423,556 - Ga0059261_0436 0.68 +0.3 423,556 - Ga0059261_0436 0.68 +0.8 423,556 - Ga0059261_0436 0.68 -0.4 423,556 - Ga0059261_0436 0.68 +1.3 423,556 - Ga0059261_0436 0.68 -0.1 423,654 + Ga0059261_0436 0.72 -0.6 423,655 - Ga0059261_0436 0.72 +0.5 423,655 - Ga0059261_0436 0.72 -1.6 423,655 - Ga0059261_0436 0.72 +0.2 423,669 + +1.7 423,669 + Ga0059261_0436 0.72 +0.2 423,669 + Ga0059261_0436 0.72 +0.2 423,669 + Ga0059261_0436 0.72 +1.2 423,669 + Ga0059261_0436 0.72 +0.1 423,669 + Ga0059261_0436 0.72 -1.2 423,670 - Ga0059261_0436 0.72 +1.5 423,670 - Ga0059261_0436 0.72 -0.2 423,670 - Ga0059261_0436 0.72 -0.4 423,670 - Ga0059261_0436 0.72 +0.5 423,670 - Ga0059261_0436 0.72 +1.0 423,670 - Ga0059261_0436 0.72 -0.1 423,670 - Ga0059261_0436 0.72 +0.3 423,702 + Ga0059261_0436 0.73 +1.0 423,702 + Ga0059261_0436 0.73 +0.9 423,703 - Ga0059261_0436 0.73 +0.3 423,703 - Ga0059261_0436 0.73 +0.1 423,703 - Ga0059261_0436 0.73 -0.2 423,703 - Ga0059261_0436 0.73 +0.3 423,703 - Ga0059261_0436 0.73 +0.1 423,703 - Ga0059261_0436 0.73 -0.4 423,703 - Ga0059261_0436 0.73 +0.7 423,711 + Ga0059261_0436 0.73 +0.6 423,711 + Ga0059261_0436 0.73 -1.0 423,711 + Ga0059261_0436 0.73 -0.2 423,711 + Ga0059261_0436 0.73 -0.1 423,711 + Ga0059261_0436 0.73 -0.1 423,712 - Ga0059261_0436 0.73 -0.3 423,712 - Ga0059261_0436 0.73 +0.9 423,852 + Ga0059261_0436 0.78 -0.0 423,852 + Ga0059261_0436 0.78 +2.0 423,852 + Ga0059261_0436 0.78 +0.0 423,853 - Ga0059261_0436 0.78 -0.1 423,853 - Ga0059261_0436 0.78 +0.3 423,853 - Ga0059261_0436 0.78 +0.1 423,853 - Ga0059261_0436 0.78 +0.3 423,855 - Ga0059261_0436 0.78 -0.3 424,023 + Ga0059261_0436 0.83 -0.3 424,023 + Ga0059261_0436 0.83 -0.0 424,023 + Ga0059261_0436 0.83 -0.2 424,023 + Ga0059261_0436 0.83 -1.1 424,023 + Ga0059261_0436 0.83 -1.1 424,023 + Ga0059261_0436 0.83 +0.4 424,024 - Ga0059261_0436 0.83 +1.1 424,024 - Ga0059261_0436 0.83 -0.5 424,024 - -0.7 424,074 + Ga0059261_0436 0.85 +0.5 424,074 + Ga0059261_0436 0.85 -0.9 424,074 + Ga0059261_0436 0.85 -0.7 424,074 + Ga0059261_0436 0.85 -0.4 424,075 - Ga0059261_0436 0.85 -1.0 424,075 - Ga0059261_0436 0.85 +0.2 424,075 - Ga0059261_0436 0.85 +0.3 424,075 - Ga0059261_0436 0.85 +1.0 424,076 + Ga0059261_0436 0.85 +0.3 424,076 + Ga0059261_0436 0.85 -0.7 424,076 + Ga0059261_0436 0.85 +1.5 424,076 + Ga0059261_0436 0.85 -0.4 424,076 + Ga0059261_0436 0.85 -0.7 424,076 + Ga0059261_0436 0.85 -0.6 424,076 + Ga0059261_0436 0.85 -0.0 424,077 - Ga0059261_0436 0.85 +0.8 424,077 - Ga0059261_0436 0.85 +0.4 424,077 - Ga0059261_0436 0.85 +0.3 424,077 - Ga0059261_0436 0.85 +0.2 424,172 + Ga0059261_0436 0.88 -0.8 424,172 + Ga0059261_0436 0.88 -1.9 424,172 + Ga0059261_0436 0.88 -0.3 424,172 + Ga0059261_0436 0.88 +0.6 424,172 + Ga0059261_0436 0.88 -0.4 424,172 + Ga0059261_0436 0.88 +1.1 424,172 + Ga0059261_0436 0.88 -0.2 424,173 - Ga0059261_0436 0.88 +0.3 424,173 - Ga0059261_0436 0.88 -0.7 424,173 - Ga0059261_0436 0.88 -0.0 424,173 - Ga0059261_0436 0.88 -1.1 424,173 - Ga0059261_0436 0.88 -0.1 424,173 - +0.3 424,473 + -0.6 424,474 - +0.5 424,474 - -0.1 424,474 - -0.5 424,474 - +0.6 424,474 - -0.2 424,474 - +1.0 424,631 + +0.3 424,631 + -0.1 424,631 + +0.3 424,631 + -0.9 424,631 + +0.1 424,632 - -0.1 424,632 - +0.5 424,632 - +0.5 424,632 - +0.4 424,632 - -0.3 424,632 - -0.3 424,632 - -0.1 424,632 - -0.1 424,632 - +0.2 424,632 - -0.2 424,632 - -0.4 424,664 + -1.0 424,664 + +0.7 424,665 - -0.9 424,665 - +1.1 424,665 - -0.0 424,874 + Ga0059261_0437 0.22 +0.0 424,874 + Ga0059261_0437 0.22 +0.2 424,874 + Ga0059261_0437 0.22 +0.3 424,875 - Ga0059261_0437 0.22 +0.3 425,084 + Ga0059261_0437 0.36 -1.2 425,084 + Ga0059261_0437 0.36 -1.6 425,085 - Ga0059261_0437 0.36 -0.0 425,085 - Ga0059261_0437 0.36 +0.3 425,085 - Ga0059261_0437 0.36 -0.2 425,085 - Ga0059261_0437 0.36 -0.5 425,602 + Ga0059261_0437 0.72 -0.4 425,602 + Ga0059261_0437 0.72 +0.3 425,603 - Ga0059261_0437 0.72 -1.1 425,667 - Ga0059261_0437 0.76 +0.1 425,721 - +1.3 425,826 - Ga0059261_0437 0.87 +0.4 425,858 + Ga0059261_0437 0.89 +0.5 425,858 + Ga0059261_0437 0.89 -2.7 425,859 - Ga0059261_0437 0.90 +0.7 425,986 + +0.1 425,986 + +0.1 425,987 - +0.1 425,987 - +0.0 425,987 - -0.3 425,987 - +0.1 426,009 - +0.2 426,033 + +0.1 426,033 + +0.2 426,034 - +0.3 426,073 + -0.3 426,074 - +0.2 426,074 - -0.4 426,092 + +0.4 426,092 + +0.1 426,093 - -0.5 426,093 - -0.4 426,224 + +0.4 426,225 - +0.5 426,225 - +0.4 426,225 - +0.6 426,225 - +0.2 426,284 + -1.1 426,285 - +0.1 426,328 + -1.6 426,338 + -0.7 426,339 - -0.1 426,339 - +0.1 426,376 + -0.9 426,376 + -1.2 426,376 + -0.8 426,376 + +0.1 426,376 + +0.3 426,377 - +0.1 426,377 - -1.9 426,377 - +0.3 426,377 - +0.1 426,400 - -0.4 426,428 + -0.7 426,428 + +1.2 426,429 - -0.2 426,429 - +0.0 426,431 + -0.9 426,431 + +1.3 426,431 + +3.3 426,431 + +0.8 426,431 + -0.1 426,431 + +0.6 426,431 + -1.1 426,432 - +0.7 426,432 - +0.2 426,432 - -0.1 426,432 - +0.5 426,432 - +0.7 426,659 - +0.2 426,716 + +0.7 426,716 + -1.3 426,716 + -1.7 426,717 - -0.3 426,717 - -0.1 426,717 - +0.6 426,724 + -0.7 426,724 + +0.1 426,775 + +0.7 426,776 - -0.9 426,776 - +1.9 426,776 - +0.5 426,780 + +0.4 426,780 + -0.3 426,781 - +2.9 426,888 - +0.0 426,973 + -0.2 426,973 + +0.2 426,974 - +0.4 426,974 - -0.2 426,974 - +0.8 426,974 - +0.6 426,974 - -0.2 426,974 - +1.3 426,975 + +1.0 426,975 + +1.5 426,975 + +0.9 426,975 + +0.6 426,976 - +0.6 426,976 - +1.5 426,976 - -0.1 426,976 - +0.4 427,007 + Ga0059261_0438 0.19 +0.5 427,007 + Ga0059261_0438 0.19 +0.3 427,007 + Ga0059261_0438 0.19 +0.2 427,007 + Ga0059261_0438 0.19 +0.3 427,008 - Ga0059261_0438 0.20 +0.1
Or see this region's nucleotide sequence