Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0121

Experiment: Tetracycline 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0120 and Ga0059261_0121 overlap by 17 nucleotidesGa0059261_0121 and Ga0059261_0122 are separated by 28 nucleotides Ga0059261_0120: Ga0059261_0120 - lytic murein transglycosylase, at 114,126 to 115,178 _0120 Ga0059261_0121: Ga0059261_0121 - Sporulation related domain, at 115,162 to 116,040 _0121 Ga0059261_0122: Ga0059261_0122 - D-alanyl-D-alanine carboxypeptidase, at 116,069 to 117,256 _0122 Position (kb) 115 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 114.188 kb on + strandat 114.188 kb on + strandat 114.189 kb on - strandat 114.189 kb on - strandat 114.189 kb on - strandat 114.189 kb on - strandat 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.243 kb on - strand, within Ga0059261_0120at 114.243 kb on - strand, within Ga0059261_0120at 114.243 kb on - strand, within Ga0059261_0120at 114.243 kb on - strand, within Ga0059261_0120at 114.324 kb on + strand, within Ga0059261_0120at 114.405 kb on + strand, within Ga0059261_0120at 114.405 kb on + strand, within Ga0059261_0120at 114.406 kb on - strand, within Ga0059261_0120at 114.456 kb on + strand, within Ga0059261_0120at 114.457 kb on - strand, within Ga0059261_0120at 114.549 kb on + strand, within Ga0059261_0120at 114.549 kb on + strand, within Ga0059261_0120at 114.549 kb on + strand, within Ga0059261_0120at 114.558 kb on + strand, within Ga0059261_0120at 114.558 kb on + strand, within Ga0059261_0120at 114.558 kb on + strand, within Ga0059261_0120at 114.558 kb on + strand, within Ga0059261_0120at 114.558 kb on + strand, within Ga0059261_0120at 114.558 kb on + strandat 114.559 kb on - strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.604 kb on - strand, within Ga0059261_0120at 114.717 kb on + strand, within Ga0059261_0120at 114.741 kb on + strand, within Ga0059261_0120at 114.741 kb on + strand, within Ga0059261_0120at 114.741 kb on + strand, within Ga0059261_0120at 114.742 kb on - strand, within Ga0059261_0120at 114.742 kb on - strand, within Ga0059261_0120at 114.742 kb on - strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.829 kb on - strand, within Ga0059261_0120at 114.921 kb on - strand, within Ga0059261_0120at 115.080 kb on + strandat 115.080 kb on + strandat 115.098 kb on + strandat 115.098 kb on + strandat 115.116 kb on + strandat 115.116 kb on + strandat 115.118 kb on + strandat 115.118 kb on + strandat 115.118 kb on + strandat 115.134 kb on + strandat 115.134 kb on + strandat 115.134 kb on + strandat 115.430 kb on + strand, within Ga0059261_0121at 115.455 kb on + strand, within Ga0059261_0121at 115.536 kb on + strand, within Ga0059261_0121at 116.008 kb on + strandat 116.008 kb on + strandat 116.008 kb on + strandat 116.603 kb on + strand, within Ga0059261_0122

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.002 mg/ml
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114,188 + +0.1
114,188 + -2.4
114,189 - -0.4
114,189 - -1.5
114,189 - +0.8
114,189 - -0.6
114,240 + Ga0059261_0120 0.11 +0.1
114,240 + Ga0059261_0120 0.11 -0.1
114,240 + Ga0059261_0120 0.11 +0.3
114,240 + Ga0059261_0120 0.11 -0.0
114,240 + Ga0059261_0120 0.11 -1.1
114,240 + Ga0059261_0120 0.11 -0.4
114,240 + Ga0059261_0120 0.11 -0.5
114,240 + Ga0059261_0120 0.11 -0.7
114,240 + Ga0059261_0120 0.11 -0.4
114,240 + Ga0059261_0120 0.11 -1.2
114,240 + Ga0059261_0120 0.11 -0.4
114,240 + Ga0059261_0120 0.11 -2.4
114,240 + Ga0059261_0120 0.11 -0.3
114,241 - Ga0059261_0120 0.11 +0.8
114,241 - Ga0059261_0120 0.11 -2.4
114,241 - Ga0059261_0120 0.11 -0.8
114,241 - Ga0059261_0120 0.11 -0.7
114,241 - Ga0059261_0120 0.11 -0.4
114,241 - Ga0059261_0120 0.11 -0.1
114,241 - Ga0059261_0120 0.11 -3.1
114,241 - Ga0059261_0120 0.11 -1.6
114,242 + Ga0059261_0120 0.11 -0.4
114,242 + Ga0059261_0120 0.11 +0.2
114,242 + Ga0059261_0120 0.11 +0.2
114,242 + Ga0059261_0120 0.11 +1.7
114,242 + Ga0059261_0120 0.11 -0.5
114,242 + Ga0059261_0120 0.11 -2.0
114,242 + Ga0059261_0120 0.11 -0.3
114,243 - Ga0059261_0120 0.11 +0.4
114,243 - Ga0059261_0120 0.11 +0.1
114,243 - Ga0059261_0120 0.11 -0.3
114,243 - Ga0059261_0120 0.11 -0.2
114,324 + Ga0059261_0120 0.19 -0.3
114,405 + Ga0059261_0120 0.26 -0.8
114,405 + Ga0059261_0120 0.26 -0.6
114,406 - Ga0059261_0120 0.27 -0.3
114,456 + Ga0059261_0120 0.31 -0.8
114,457 - Ga0059261_0120 0.31 +0.6
114,549 + Ga0059261_0120 0.40 -0.1
114,549 + Ga0059261_0120 0.40 +0.2
114,549 + Ga0059261_0120 0.40 -0.8
114,558 + Ga0059261_0120 0.41 -1.4
114,558 + Ga0059261_0120 0.41 -0.6
114,558 + Ga0059261_0120 0.41 +0.3
114,558 + Ga0059261_0120 0.41 -1.8
114,558 + Ga0059261_0120 0.41 -0.2
114,558 + +0.2
114,559 - Ga0059261_0120 0.41 +1.0
114,603 + Ga0059261_0120 0.45 +1.8
114,603 + Ga0059261_0120 0.45 -1.2
114,603 + Ga0059261_0120 0.45 -2.4
114,603 + Ga0059261_0120 0.45 +0.5
114,603 + Ga0059261_0120 0.45 -0.2
114,603 + Ga0059261_0120 0.45 -0.9
114,604 - Ga0059261_0120 0.45 +0.8
114,717 + Ga0059261_0120 0.56 -0.9
114,741 + Ga0059261_0120 0.58 +0.7
114,741 + Ga0059261_0120 0.58 -2.1
114,741 + Ga0059261_0120 0.58 +0.4
114,742 - Ga0059261_0120 0.58 -1.8
114,742 - Ga0059261_0120 0.58 -0.2
114,742 - Ga0059261_0120 0.58 -1.8
114,828 + Ga0059261_0120 0.67 +0.2
114,828 + Ga0059261_0120 0.67 -0.9
114,828 + Ga0059261_0120 0.67 +0.8
114,828 + Ga0059261_0120 0.67 -0.0
114,828 + Ga0059261_0120 0.67 -0.1
114,828 + Ga0059261_0120 0.67 -0.2
114,829 - Ga0059261_0120 0.67 +1.7
114,921 - Ga0059261_0120 0.75 -1.2
115,080 + -1.8
115,080 + +0.3
115,098 + +0.6
115,098 + +0.2
115,116 + +0.3
115,116 + +0.8
115,118 + -2.8
115,118 + +1.0
115,118 + -0.4
115,134 + -0.6
115,134 + -0.4
115,134 + -0.5
115,430 + Ga0059261_0121 0.30 +0.0
115,455 + Ga0059261_0121 0.33 +1.2
115,536 + Ga0059261_0121 0.43 +0.3
116,008 + +0.6
116,008 + +0.0
116,008 + -0.7
116,603 + Ga0059261_0122 0.45 +0.1

Or see this region's nucleotide sequence