Experiment: Tetracycline 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0027 and Ga0059261_0028 are separated by 88 nucleotides Ga0059261_0028 and Ga0059261_0029 are separated by 41 nucleotides Ga0059261_0029 and Ga0059261_0030 are separated by 25 nucleotides
Ga0059261_0027: Ga0059261_0027 - hypothetical protein, at 23,672 to 24,655
_0027
Ga0059261_0028: Ga0059261_0028 - Predicted transcriptional regulators, at 24,744 to 25,292
_0028
Ga0059261_0029: Ga0059261_0029 - Predicted lactoylglutathione lyase, at 25,334 to 25,711
_0029
Ga0059261_0030: Ga0059261_0030 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 25,737 to 26,549
_0030
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.760 kb on + strand at 23.760 kb on + strand at 23.797 kb on + strand, within Ga0059261_0027 at 23.798 kb on - strand, within Ga0059261_0027 at 23.841 kb on + strand, within Ga0059261_0027 at 23.841 kb on + strand, within Ga0059261_0027 at 23.842 kb on - strand, within Ga0059261_0027 at 23.842 kb on - strand, within Ga0059261_0027 at 23.842 kb on - strand, within Ga0059261_0027 at 24.135 kb on + strand, within Ga0059261_0027 at 24.135 kb on + strand, within Ga0059261_0027 at 24.135 kb on + strand, within Ga0059261_0027 at 24.135 kb on + strand at 24.135 kb on + strand, within Ga0059261_0027 at 24.136 kb on - strand, within Ga0059261_0027 at 24.136 kb on - strand, within Ga0059261_0027 at 24.136 kb on - strand, within Ga0059261_0027 at 24.136 kb on - strand, within Ga0059261_0027 at 24.136 kb on - strand, within Ga0059261_0027 at 24.136 kb on - strand, within Ga0059261_0027 at 24.136 kb on - strand, within Ga0059261_0027 at 24.138 kb on + strand, within Ga0059261_0027 at 24.138 kb on + strand, within Ga0059261_0027 at 24.139 kb on - strand, within Ga0059261_0027 at 24.139 kb on - strand, within Ga0059261_0027 at 24.139 kb on - strand, within Ga0059261_0027 at 24.139 kb on - strand, within Ga0059261_0027 at 24.139 kb on - strand, within Ga0059261_0027 at 24.315 kb on + strand, within Ga0059261_0027 at 24.444 kb on + strand, within Ga0059261_0027 at 24.444 kb on + strand, within Ga0059261_0027 at 24.445 kb on - strand, within Ga0059261_0027 at 24.445 kb on - strand, within Ga0059261_0027 at 24.483 kb on + strand, within Ga0059261_0027 at 24.483 kb on + strand, within Ga0059261_0027 at 24.483 kb on + strand, within Ga0059261_0027 at 24.483 kb on + strand, within Ga0059261_0027 at 24.483 kb on + strand, within Ga0059261_0027 at 24.483 kb on + strand, within Ga0059261_0027 at 24.483 kb on + strand, within Ga0059261_0027 at 24.483 kb on + strand, within Ga0059261_0027 at 24.483 kb on + strand, within Ga0059261_0027 at 24.483 kb on + strand, within Ga0059261_0027 at 24.484 kb on - strand, within Ga0059261_0027 at 24.484 kb on - strand, within Ga0059261_0027 at 24.484 kb on - strand at 24.484 kb on - strand, within Ga0059261_0027 at 24.484 kb on - strand, within Ga0059261_0027 at 24.573 kb on + strand at 24.573 kb on + strand at 24.573 kb on + strand at 24.573 kb on + strand at 24.573 kb on + strand at 24.573 kb on + strand at 24.574 kb on - strand at 24.574 kb on - strand at 24.574 kb on - strand at 24.815 kb on + strand, within Ga0059261_0028 at 24.815 kb on + strand, within Ga0059261_0028 at 24.815 kb on + strand, within Ga0059261_0028 at 24.816 kb on - strand, within Ga0059261_0028 at 24.816 kb on - strand, within Ga0059261_0028 at 24.816 kb on - strand, within Ga0059261_0028 at 24.845 kb on - strand, within Ga0059261_0028 at 24.951 kb on + strand, within Ga0059261_0028 at 25.084 kb on + strand, within Ga0059261_0028 at 25.085 kb on - strand, within Ga0059261_0028 at 25.085 kb on - strand at 25.085 kb on - strand, within Ga0059261_0028 at 25.085 kb on - strand, within Ga0059261_0028 at 25.180 kb on + strand, within Ga0059261_0028 at 25.181 kb on - strand, within Ga0059261_0028 at 25.388 kb on + strand, within Ga0059261_0029 at 25.388 kb on + strand, within Ga0059261_0029 at 25.388 kb on + strand, within Ga0059261_0029 at 25.389 kb on - strand, within Ga0059261_0029 at 25.389 kb on - strand, within Ga0059261_0029 at 25.410 kb on + strand, within Ga0059261_0029 at 25.410 kb on + strand, within Ga0059261_0029 at 25.411 kb on - strand, within Ga0059261_0029 at 25.411 kb on - strand, within Ga0059261_0029 at 25.517 kb on - strand, within Ga0059261_0029 at 25.631 kb on + strand, within Ga0059261_0029 at 25.631 kb on + strand, within Ga0059261_0029 at 25.631 kb on + strand, within Ga0059261_0029 at 25.632 kb on - strand, within Ga0059261_0029 at 25.632 kb on - strand, within Ga0059261_0029 at 25.632 kb on - strand, within Ga0059261_0029 at 25.632 kb on - strand, within Ga0059261_0029 at 25.632 kb on - strand, within Ga0059261_0029 at 25.632 kb on - strand, within Ga0059261_0029 at 25.644 kb on - strand, within Ga0059261_0029 at 25.646 kb on + strand, within Ga0059261_0029 at 25.646 kb on + strand, within Ga0059261_0029 at 25.646 kb on + strand, within Ga0059261_0029 at 25.646 kb on + strand, within Ga0059261_0029 at 25.646 kb on + strand, within Ga0059261_0029 at 25.646 kb on + strand, within Ga0059261_0029 at 25.646 kb on + strand, within Ga0059261_0029 at 25.646 kb on + strand, within Ga0059261_0029 at 25.646 kb on + strand, within Ga0059261_0029 at 25.646 kb on + strand, within Ga0059261_0029 at 25.647 kb on - strand, within Ga0059261_0029 at 25.647 kb on - strand, within Ga0059261_0029 at 25.647 kb on - strand, within Ga0059261_0029 at 25.647 kb on - strand, within Ga0059261_0029 at 25.647 kb on - strand, within Ga0059261_0029 at 25.647 kb on - strand, within Ga0059261_0029 at 25.647 kb on - strand, within Ga0059261_0029 at 25.647 kb on - strand, within Ga0059261_0029 at 25.647 kb on - strand, within Ga0059261_0029 at 25.647 kb on - strand, within Ga0059261_0029 at 25.647 kb on - strand, within Ga0059261_0029 at 25.738 kb on + strand at 25.739 kb on - strand at 26.076 kb on - strand, within Ga0059261_0030 at 26.076 kb on - strand, within Ga0059261_0030 at 26.076 kb on - strand, within Ga0059261_0030 at 26.176 kb on + strand, within Ga0059261_0030 at 26.176 kb on + strand, within Ga0059261_0030 at 26.176 kb on + strand, within Ga0059261_0030 at 26.177 kb on - strand, within Ga0059261_0030 at 26.177 kb on - strand, within Ga0059261_0030 at 26.267 kb on + strand, within Ga0059261_0030 at 26.268 kb on - strand, within Ga0059261_0030
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.002 mg/ml remove 23,760 + +1.1 23,760 + -0.7 23,797 + Ga0059261_0027 0.13 -0.8 23,798 - Ga0059261_0027 0.13 -0.2 23,841 + Ga0059261_0027 0.17 +0.3 23,841 + Ga0059261_0027 0.17 -0.3 23,842 - Ga0059261_0027 0.17 -0.9 23,842 - Ga0059261_0027 0.17 -1.0 23,842 - Ga0059261_0027 0.17 -0.1 24,135 + Ga0059261_0027 0.47 +0.2 24,135 + Ga0059261_0027 0.47 -0.9 24,135 + Ga0059261_0027 0.47 -1.5 24,135 + +0.8 24,135 + Ga0059261_0027 0.47 +0.1 24,136 - Ga0059261_0027 0.47 -0.4 24,136 - Ga0059261_0027 0.47 +0.8 24,136 - Ga0059261_0027 0.47 +0.4 24,136 - Ga0059261_0027 0.47 +1.3 24,136 - Ga0059261_0027 0.47 +1.2 24,136 - Ga0059261_0027 0.47 -0.0 24,136 - Ga0059261_0027 0.47 -0.4 24,138 + Ga0059261_0027 0.47 +0.1 24,138 + Ga0059261_0027 0.47 -2.6 24,139 - Ga0059261_0027 0.47 +0.4 24,139 - Ga0059261_0027 0.47 +0.6 24,139 - Ga0059261_0027 0.47 +0.3 24,139 - Ga0059261_0027 0.47 +0.1 24,139 - Ga0059261_0027 0.47 +1.9 24,315 + Ga0059261_0027 0.65 -2.0 24,444 + Ga0059261_0027 0.78 +0.4 24,444 + Ga0059261_0027 0.78 -0.2 24,445 - Ga0059261_0027 0.79 +0.4 24,445 - Ga0059261_0027 0.79 -0.1 24,483 + Ga0059261_0027 0.82 -0.1 24,483 + Ga0059261_0027 0.82 -2.2 24,483 + Ga0059261_0027 0.82 +0.5 24,483 + Ga0059261_0027 0.82 -0.4 24,483 + Ga0059261_0027 0.82 +0.4 24,483 + Ga0059261_0027 0.82 -0.9 24,483 + Ga0059261_0027 0.82 -0.3 24,483 + Ga0059261_0027 0.82 -0.4 24,483 + Ga0059261_0027 0.82 -0.7 24,483 + Ga0059261_0027 0.82 +0.0 24,484 - Ga0059261_0027 0.83 +0.3 24,484 - Ga0059261_0027 0.83 -0.1 24,484 - -1.2 24,484 - Ga0059261_0027 0.83 -0.8 24,484 - Ga0059261_0027 0.83 +0.8 24,573 + -0.3 24,573 + +0.7 24,573 + +0.5 24,573 + +0.4 24,573 + -0.2 24,573 + -0.9 24,574 - -0.1 24,574 - -0.2 24,574 - -0.3 24,815 + Ga0059261_0028 0.13 +0.7 24,815 + Ga0059261_0028 0.13 +2.1 24,815 + Ga0059261_0028 0.13 -0.3 24,816 - Ga0059261_0028 0.13 +0.3 24,816 - Ga0059261_0028 0.13 +1.6 24,816 - Ga0059261_0028 0.13 -0.5 24,845 - Ga0059261_0028 0.18 -0.7 24,951 + Ga0059261_0028 0.38 -1.1 25,084 + Ga0059261_0028 0.62 +1.1 25,085 - Ga0059261_0028 0.62 +0.1 25,085 - +0.8 25,085 - Ga0059261_0028 0.62 +0.5 25,085 - Ga0059261_0028 0.62 +0.3 25,180 + Ga0059261_0028 0.79 +0.5 25,181 - Ga0059261_0028 0.80 +0.9 25,388 + Ga0059261_0029 0.14 -2.0 25,388 + Ga0059261_0029 0.14 +0.3 25,388 + Ga0059261_0029 0.14 -0.8 25,389 - Ga0059261_0029 0.15 -0.1 25,389 - Ga0059261_0029 0.15 -0.9 25,410 + Ga0059261_0029 0.20 -2.2 25,410 + Ga0059261_0029 0.20 +0.1 25,411 - Ga0059261_0029 0.20 +0.9 25,411 - Ga0059261_0029 0.20 -0.0 25,517 - Ga0059261_0029 0.48 +0.2 25,631 + Ga0059261_0029 0.79 +0.5 25,631 + Ga0059261_0029 0.79 -0.9 25,631 + Ga0059261_0029 0.79 -0.7 25,632 - Ga0059261_0029 0.79 +1.6 25,632 - Ga0059261_0029 0.79 +0.7 25,632 - Ga0059261_0029 0.79 +1.2 25,632 - Ga0059261_0029 0.79 -0.0 25,632 - Ga0059261_0029 0.79 +1.0 25,632 - Ga0059261_0029 0.79 +0.9 25,644 - Ga0059261_0029 0.82 +1.5 25,646 + Ga0059261_0029 0.83 -1.8 25,646 + Ga0059261_0029 0.83 -0.5 25,646 + Ga0059261_0029 0.83 -0.0 25,646 + Ga0059261_0029 0.83 -2.6 25,646 + Ga0059261_0029 0.83 -0.6 25,646 + Ga0059261_0029 0.83 -0.6 25,646 + Ga0059261_0029 0.83 +0.7 25,646 + Ga0059261_0029 0.83 -0.5 25,646 + Ga0059261_0029 0.83 +0.3 25,646 + Ga0059261_0029 0.83 -0.5 25,647 - Ga0059261_0029 0.83 +0.9 25,647 - Ga0059261_0029 0.83 -0.4 25,647 - Ga0059261_0029 0.83 -1.2 25,647 - Ga0059261_0029 0.83 -0.6 25,647 - Ga0059261_0029 0.83 +0.6 25,647 - Ga0059261_0029 0.83 -0.4 25,647 - Ga0059261_0029 0.83 -0.5 25,647 - Ga0059261_0029 0.83 -0.4 25,647 - Ga0059261_0029 0.83 +0.4 25,647 - Ga0059261_0029 0.83 +0.1 25,647 - Ga0059261_0029 0.83 +0.6 25,738 + +0.2 25,739 - +1.0 26,076 - Ga0059261_0030 0.42 -1.4 26,076 - Ga0059261_0030 0.42 -0.2 26,076 - Ga0059261_0030 0.42 +0.3 26,176 + Ga0059261_0030 0.54 -1.0 26,176 + Ga0059261_0030 0.54 +0.7 26,176 + Ga0059261_0030 0.54 +0.1 26,177 - Ga0059261_0030 0.54 -1.1 26,177 - Ga0059261_0030 0.54 +1.1 26,267 + Ga0059261_0030 0.65 +1.3 26,268 - Ga0059261_0030 0.65 -0.8
Or see this region's nucleotide sequence