Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03805

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03795 and AO356_03800 are separated by 88 nucleotidesAO356_03800 and AO356_03805 are separated by 31 nucleotidesAO356_03805 and AO356_03810 are separated by 5 nucleotidesAO356_03810 and AO356_03815 are separated by 102 nucleotidesAO356_03815 and AO356_03820 are separated by 6 nucleotides AO356_03795: AO356_03795 - flagellar hook-length control protein, at 840,711 to 842,084 _03795 AO356_03800: AO356_03800 - histidine kinase, at 842,173 to 842,517 _03800 AO356_03805: AO356_03805 - chemotaxis protein CheY, at 842,549 to 844,255 _03805 AO356_03810: AO356_03810 - anti-anti-sigma factor, at 844,261 to 844,566 _03810 AO356_03815: AO356_03815 - flagellar biogenesis protein, at 844,669 to 845,118 _03815 AO356_03820: AO356_03820 - flagellar protein export ATPase FliI, at 845,125 to 846,483 _03820 Position (kb) 842 843 844 845Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 841.988 kb on + strandat 842.085 kb on - strandat 842.112 kb on + strandat 842.112 kb on + strandat 842.112 kb on + strandat 842.112 kb on + strandat 842.113 kb on - strandat 842.113 kb on - strandat 842.113 kb on - strandat 842.113 kb on - strandat 842.116 kb on + strandat 842.116 kb on + strandat 842.116 kb on + strandat 842.117 kb on - strandat 842.128 kb on + strandat 842.128 kb on + strandat 842.129 kb on - strandat 842.129 kb on - strandat 842.437 kb on - strand, within AO356_03800at 842.437 kb on - strand, within AO356_03800at 842.550 kb on + strandat 842.551 kb on - strandat 842.588 kb on - strandat 842.781 kb on + strand, within AO356_03805at 842.782 kb on - strand, within AO356_03805at 842.809 kb on + strand, within AO356_03805at 842.809 kb on + strand, within AO356_03805at 842.810 kb on - strand, within AO356_03805at 842.810 kb on - strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.920 kb on + strand, within AO356_03805at 842.920 kb on + strand, within AO356_03805at 842.921 kb on - strand, within AO356_03805at 842.922 kb on + strand, within AO356_03805at 842.922 kb on + strand, within AO356_03805at 842.923 kb on - strand, within AO356_03805at 842.923 kb on - strand, within AO356_03805at 842.980 kb on - strand, within AO356_03805at 843.070 kb on - strand, within AO356_03805at 843.070 kb on - strand, within AO356_03805at 843.269 kb on + strand, within AO356_03805at 843.269 kb on + strand, within AO356_03805at 843.269 kb on + strand, within AO356_03805at 843.270 kb on - strand, within AO356_03805at 843.270 kb on - strand, within AO356_03805at 843.272 kb on + strand, within AO356_03805at 843.273 kb on - strand, within AO356_03805at 843.273 kb on - strand, within AO356_03805at 843.273 kb on - strand, within AO356_03805at 843.392 kb on - strand, within AO356_03805at 843.392 kb on - strand, within AO356_03805at 843.392 kb on - strand, within AO356_03805at 843.421 kb on - strand, within AO356_03805at 843.586 kb on - strand, within AO356_03805at 843.717 kb on + strand, within AO356_03805at 843.717 kb on + strand, within AO356_03805at 843.718 kb on - strand, within AO356_03805at 843.718 kb on - strand, within AO356_03805at 843.816 kb on + strand, within AO356_03805at 843.816 kb on + strand, within AO356_03805at 843.816 kb on + strand, within AO356_03805at 843.816 kb on + strand, within AO356_03805at 843.816 kb on + strand, within AO356_03805at 843.817 kb on - strand, within AO356_03805at 843.817 kb on - strand, within AO356_03805at 843.817 kb on - strand, within AO356_03805at 843.817 kb on - strand, within AO356_03805at 843.817 kb on - strand, within AO356_03805at 843.921 kb on + strand, within AO356_03805at 843.921 kb on + strand, within AO356_03805at 843.921 kb on + strand, within AO356_03805at 843.921 kb on + strand, within AO356_03805at 843.922 kb on - strand, within AO356_03805at 843.922 kb on - strand, within AO356_03805at 843.922 kb on - strand, within AO356_03805at 843.922 kb on - strand, within AO356_03805at 843.922 kb on - strand, within AO356_03805at 844.116 kb on + strandat 844.116 kb on + strandat 844.117 kb on - strandat 844.117 kb on - strandat 844.117 kb on - strandat 844.409 kb on + strand, within AO356_03810at 844.410 kb on - strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.547 kb on - strandat 844.547 kb on - strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.596 kb on + strandat 844.596 kb on + strandat 844.597 kb on - strandat 844.597 kb on - strandat 844.605 kb on + strandat 844.605 kb on + strandat 844.605 kb on + strandat 844.640 kb on - strandat 844.640 kb on - strandat 844.647 kb on - strandat 844.673 kb on + strandat 844.674 kb on - strandat 844.758 kb on + strand, within AO356_03815at 844.759 kb on - strand, within AO356_03815at 844.760 kb on + strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.967 kb on + strand, within AO356_03815at 844.967 kb on + strand, within AO356_03815at 844.967 kb on + strand, within AO356_03815at 844.968 kb on - strand, within AO356_03815at 845.033 kb on + strand, within AO356_03815at 845.033 kb on + strand, within AO356_03815at 845.034 kb on - strand, within AO356_03815at 845.034 kb on - strand, within AO356_03815at 845.126 kb on + strandat 845.126 kb on + strandat 845.126 kb on + strandat 845.126 kb on + strandat 845.213 kb on + strandat 845.214 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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841,988 + +1.4
842,085 - +1.0
842,112 + -0.4
842,112 + -0.8
842,112 + -0.7
842,112 + +0.5
842,113 - -0.6
842,113 - -1.1
842,113 - -0.3
842,113 - +1.4
842,116 + -0.1
842,116 + -0.5
842,116 + +0.7
842,117 - -0.4
842,128 + +1.2
842,128 + +0.6
842,129 - +0.2
842,129 - -0.5
842,437 - AO356_03800 0.77 -1.2
842,437 - AO356_03800 0.77 -3.2
842,550 + -1.2
842,551 - +1.0
842,588 - +1.1
842,781 + AO356_03805 0.14 -0.9
842,782 - AO356_03805 0.14 +0.6
842,809 + AO356_03805 0.15 +0.3
842,809 + AO356_03805 0.15 -0.8
842,810 - AO356_03805 0.15 +1.0
842,810 - AO356_03805 0.15 -0.0
842,823 + AO356_03805 0.16 +0.1
842,823 + AO356_03805 0.16 +0.2
842,823 + AO356_03805 0.16 -0.1
842,823 + AO356_03805 0.16 +1.0
842,824 - AO356_03805 0.16 -0.3
842,824 - AO356_03805 0.16 +0.2
842,824 - AO356_03805 0.16 -0.3
842,824 - AO356_03805 0.16 +0.4
842,901 + AO356_03805 0.21 -0.5
842,901 + AO356_03805 0.21 +0.3
842,901 + AO356_03805 0.21 -0.5
842,901 + AO356_03805 0.21 -1.4
842,920 + AO356_03805 0.22 -1.4
842,920 + AO356_03805 0.22 -0.1
842,921 - AO356_03805 0.22 +1.3
842,922 + AO356_03805 0.22 +0.6
842,922 + AO356_03805 0.22 -0.4
842,923 - AO356_03805 0.22 +0.8
842,923 - AO356_03805 0.22 +0.8
842,980 - AO356_03805 0.25 -0.0
843,070 - AO356_03805 0.31 +1.1
843,070 - AO356_03805 0.31 +0.5
843,269 + AO356_03805 0.42 -1.3
843,269 + AO356_03805 0.42 -0.3
843,269 + AO356_03805 0.42 +0.9
843,270 - AO356_03805 0.42 -0.2
843,270 - AO356_03805 0.42 -0.1
843,272 + AO356_03805 0.42 -0.1
843,273 - AO356_03805 0.42 -0.9
843,273 - AO356_03805 0.42 -0.1
843,273 - AO356_03805 0.42 +0.2
843,392 - AO356_03805 0.49 +0.8
843,392 - AO356_03805 0.49 +0.8
843,392 - AO356_03805 0.49 +0.0
843,421 - AO356_03805 0.51 +0.1
843,586 - AO356_03805 0.61 +0.3
843,717 + AO356_03805 0.68 -0.6
843,717 + AO356_03805 0.68 +0.2
843,718 - AO356_03805 0.68 +0.8
843,718 - AO356_03805 0.68 -0.1
843,816 + AO356_03805 0.74 -0.5
843,816 + AO356_03805 0.74 -1.1
843,816 + AO356_03805 0.74 -1.1
843,816 + AO356_03805 0.74 -0.1
843,816 + AO356_03805 0.74 -0.3
843,817 - AO356_03805 0.74 -1.3
843,817 - AO356_03805 0.74 +0.4
843,817 - AO356_03805 0.74 +0.2
843,817 - AO356_03805 0.74 -0.2
843,817 - AO356_03805 0.74 +0.6
843,921 + AO356_03805 0.80 +0.7
843,921 + AO356_03805 0.80 -0.4
843,921 + AO356_03805 0.80 +0.5
843,921 + AO356_03805 0.80 -0.3
843,922 - AO356_03805 0.80 -0.3
843,922 - AO356_03805 0.80 -0.5
843,922 - AO356_03805 0.80 -2.3
843,922 - AO356_03805 0.80 -0.6
843,922 - AO356_03805 0.80 +0.6
844,116 + -0.3
844,116 + +0.2
844,117 - +0.1
844,117 - -0.2
844,117 - +1.0
844,409 + AO356_03810 0.48 -0.3
844,410 - AO356_03810 0.49 +0.2
844,466 + AO356_03810 0.67 +0.5
844,466 + AO356_03810 0.67 -0.7
844,466 + AO356_03810 0.67 -1.1
844,466 + AO356_03810 0.67 +0.4
844,466 + AO356_03810 0.67 -0.4
844,467 - AO356_03810 0.67 -0.9
844,467 - AO356_03810 0.67 -3.8
844,467 - AO356_03810 0.67 -0.8
844,467 - AO356_03810 0.67 +0.0
844,547 - +0.7
844,547 - +0.2
844,590 + -0.8
844,590 + -0.8
844,590 + -1.7
844,590 + +0.5
844,590 + +0.1
844,590 + +0.7
844,591 - -0.3
844,591 - +0.5
844,591 - -0.1
844,591 - -0.5
844,591 - +0.4
844,591 - -0.2
844,591 - +0.9
844,591 - -1.4
844,591 - +0.5
844,591 - +0.4
844,591 - +0.0
844,591 - -1.0
844,596 + -0.2
844,596 + -0.9
844,597 - -0.0
844,597 - -0.1
844,605 + -0.6
844,605 + -1.5
844,605 + +0.5
844,640 - +0.7
844,640 - -0.3
844,647 - -0.0
844,673 + -0.6
844,674 - +0.4
844,758 + AO356_03815 0.20 +1.6
844,759 - AO356_03815 0.20 +1.6
844,760 + AO356_03815 0.20 +0.8
844,761 - AO356_03815 0.20 +1.7
844,761 - AO356_03815 0.20 +1.0
844,761 - AO356_03815 0.20 +1.4
844,761 - AO356_03815 0.20 +1.6
844,967 + AO356_03815 0.66 +1.3
844,967 + AO356_03815 0.66 +1.0
844,967 + AO356_03815 0.66 +1.5
844,968 - AO356_03815 0.66 +1.3
845,033 + AO356_03815 0.81 +1.7
845,033 + AO356_03815 0.81 +1.1
845,034 - AO356_03815 0.81 +1.2
845,034 - AO356_03815 0.81 +2.0
845,126 + +1.7
845,126 + +0.6
845,126 + +1.1
845,126 + +1.6
845,213 + +1.4
845,214 - +1.3

Or see this region's nucleotide sequence