Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.429.1 and Xcc-8004.430.1 are separated by 80 nucleotides Xcc-8004.430.1 and Xcc-8004.431.1 overlap by 112 nucleotides Xcc-8004.431.1 and Xcc-8004.432.1 are separated by 536 nucleotides Xcc-8004.432.1 and Xcc-8004.433.1 are separated by 33 nucleotides Xcc-8004.433.1 and Xcc-8004.434.1 are separated by 79 nucleotides
Xcc-8004.429.1: Xcc-8004.429.1 - hypothetical protein, at 407,739 to 408,065
Xcc-8004.429.1
Xcc-8004.430.1: Xcc-8004.430.1 - Xanthomonadin biosynthesis related protein, at 408,146 to 408,340
Xcc-8004.430.1
Xcc-8004.431.1: Xcc-8004.431.1 - Xanthomonadin biosynthesis related protein, at 408,229 to 408,426
Xcc-8004.431.1
Xcc-8004.432.1: Xcc-8004.432.1 - hypothetical protein, at 408,963 to 409,058
Xcc-8004.432.1
Xcc-8004.433.1: Xcc-8004.433.1 - Xanthomonadin biosynthesis related protein, at 409,092 to 409,283
Xcc-8004.433.1
Xcc-8004.434.1: Xcc-8004.434.1 - putative; ORF located using Glimmer/Genemark, at 409,363 to 409,809
Xcc-8004.434.1
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1 at 408.010 kb on + strand, within Xcc-8004.429.1 at 408.045 kb on - strand at 408.045 kb on - strand at 408.066 kb on - strand at 408.085 kb on - strand at 408.085 kb on - strand at 408.492 kb on + strand at 408.496 kb on + strand at 408.497 kb on - strand at 408.578 kb on - strand at 408.578 kb on - strand at 408.578 kb on - strand at 408.621 kb on + strand at 408.622 kb on - strand at 408.622 kb on - strand at 408.634 kb on - strand at 408.648 kb on + strand at 408.648 kb on + strand at 408.648 kb on + strand at 408.665 kb on - strand at 408.665 kb on - strand at 408.665 kb on - strand at 408.698 kb on + strand at 408.698 kb on + strand at 408.698 kb on + strand at 408.698 kb on + strand at 408.699 kb on - strand at 408.699 kb on - strand at 408.699 kb on - strand at 408.699 kb on - strand at 408.699 kb on - strand at 408.713 kb on + strand at 408.714 kb on - strand at 408.722 kb on + strand at 408.722 kb on + strand at 408.722 kb on + strand at 408.722 kb on + strand at 408.722 kb on + strand at 408.723 kb on - strand at 408.730 kb on + strand at 408.734 kb on + strand at 408.734 kb on + strand at 408.748 kb on + strand at 408.749 kb on - strand at 408.886 kb on + strand at 408.886 kb on + strand at 408.890 kb on + strand at 408.891 kb on - strand at 408.984 kb on - strand, within Xcc-8004.432.1 at 409.023 kb on + strand, within Xcc-8004.432.1 at 409.324 kb on + strand at 409.324 kb on + strand at 409.364 kb on + strand at 409.484 kb on + strand, within Xcc-8004.434.1 at 409.484 kb on + strand, within Xcc-8004.434.1 at 409.484 kb on + strand, within Xcc-8004.434.1 at 409.485 kb on - strand, within Xcc-8004.434.1 at 409.485 kb on - strand, within Xcc-8004.434.1 at 409.485 kb on - strand, within Xcc-8004.434.1 at 409.521 kb on + strand, within Xcc-8004.434.1 at 409.523 kb on + strand, within Xcc-8004.434.1 at 409.523 kb on + strand, within Xcc-8004.434.1 at 409.523 kb on + strand, within Xcc-8004.434.1 at 409.523 kb on + strand, within Xcc-8004.434.1 at 409.523 kb on + strand, within Xcc-8004.434.1 at 409.524 kb on - strand, within Xcc-8004.434.1 at 409.524 kb on - strand, within Xcc-8004.434.1 at 409.524 kb on - strand, within Xcc-8004.434.1 at 409.524 kb on - strand, within Xcc-8004.434.1 at 409.542 kb on + strand, within Xcc-8004.434.1 at 409.542 kb on + strand, within Xcc-8004.434.1 at 409.542 kb on + strand, within Xcc-8004.434.1 at 409.543 kb on - strand, within Xcc-8004.434.1 at 409.599 kb on - strand, within Xcc-8004.434.1 at 409.726 kb on + strand, within Xcc-8004.434.1 at 409.794 kb on + strand at 409.794 kb on + strand at 409.795 kb on - strand at 409.795 kb on - strand at 409.795 kb on - strand at 409.829 kb on - strand at 409.841 kb on - strand at 409.881 kb on - strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 408,010 + Xcc-8004.429.1 0.83 +0.0 408,045 - -0.7 408,045 - -0.7 408,066 - +0.5 408,085 - -0.5 408,085 - -0.5 408,492 + +0.3 408,496 + +0.1 408,497 - -1.7 408,578 - -0.6 408,578 - +0.4 408,578 - -0.1 408,621 + +0.4 408,622 - -0.6 408,622 - +0.7 408,634 - +0.2 408,648 + +1.0 408,648 + +1.2 408,648 + +0.5 408,665 - -1.0 408,665 - -0.1 408,665 - +0.4 408,698 + +1.2 408,698 + +0.3 408,698 + +0.2 408,698 + -1.6 408,699 - -0.4 408,699 - -1.1 408,699 - -0.1 408,699 - -0.2 408,699 - +0.1 408,713 + -2.7 408,714 - +0.6 408,722 + +0.5 408,722 + +0.0 408,722 + -0.0 408,722 + +0.9 408,722 + -0.9 408,723 - +1.1 408,730 + -0.8 408,734 + -0.7 408,734 + -0.1 408,748 + -0.6 408,749 - -0.3 408,886 + +0.2 408,886 + -0.1 408,890 + -1.3 408,891 - -0.5 408,984 - Xcc-8004.432.1 0.22 -1.5 409,023 + Xcc-8004.432.1 0.62 -1.3 409,324 + -0.5 409,324 + +0.4 409,364 + +1.7 409,484 + Xcc-8004.434.1 0.27 +0.0 409,484 + Xcc-8004.434.1 0.27 -0.7 409,484 + Xcc-8004.434.1 0.27 -0.3 409,485 - Xcc-8004.434.1 0.27 -0.7 409,485 - Xcc-8004.434.1 0.27 +0.1 409,485 - Xcc-8004.434.1 0.27 +0.7 409,521 + Xcc-8004.434.1 0.35 +0.2 409,523 + Xcc-8004.434.1 0.36 +0.4 409,523 + Xcc-8004.434.1 0.36 +1.1 409,523 + Xcc-8004.434.1 0.36 +0.6 409,523 + Xcc-8004.434.1 0.36 +0.6 409,523 + Xcc-8004.434.1 0.36 -0.5 409,524 - Xcc-8004.434.1 0.36 -0.3 409,524 - Xcc-8004.434.1 0.36 -0.8 409,524 - Xcc-8004.434.1 0.36 +0.8 409,524 - Xcc-8004.434.1 0.36 +0.2 409,542 + Xcc-8004.434.1 0.40 -0.2 409,542 + Xcc-8004.434.1 0.40 -0.1 409,542 + Xcc-8004.434.1 0.40 -0.4 409,543 - Xcc-8004.434.1 0.40 -0.5 409,599 - Xcc-8004.434.1 0.53 +0.3 409,726 + Xcc-8004.434.1 0.81 -0.4 409,794 + +0.2 409,794 + -0.6 409,795 - -2.5 409,795 - -0.1 409,795 - +0.8 409,829 - -0.6 409,841 - -1.1 409,881 - +0.0 409,922 + -1.1 409,922 + +0.2 409,922 + -0.2 409,922 + +0.1 409,922 + +0.1 409,923 - +0.9 409,923 - +0.7 409,923 - +0.5 409,923 - +0.4 409,923 - -0.6 409,923 - -0.0 409,923 - +0.3 409,923 - -0.7 409,923 - +0.6 409,923 - +0.1
Or see this region's nucleotide sequence