Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3880.1 and Xcc-8004.3881.1 are separated by 64 nucleotides Xcc-8004.3881.1 and Xcc-8004.3882.1 are separated by 37 nucleotides Xcc-8004.3882.1 and Xcc-8004.3883.1 are separated by 50 nucleotides Xcc-8004.3883.1 and Xcc-8004.3884.1 are separated by 219 nucleotides
Xcc-8004.3880.1: Xcc-8004.3880.1 - putative; ORF located using Glimmer/Genemark, at 3,749,034 to 3,749,450
Xcc-8004.3880.1
Xcc-8004.3881.1: Xcc-8004.3881.1 - hypothetical protein, at 3,749,515 to 3,749,853
Xcc-8004.3881.1
Xcc-8004.3882.1: Xcc-8004.3882.1 - hypothetical protein, at 3,749,891 to 3,750,223
Xcc-8004.3882.1
Xcc-8004.3883.1: Xcc-8004.3883.1 - Oxidoreductase, aldo/keto reductase family, at 3,750,274 to 3,751,128
Xcc-8004.3883.1
Xcc-8004.3884.1: Xcc-8004.3884.1 - Catalase (EC 1.11.1.6), at 3,751,348 to 3,753,453
Xcc-8004.3884.1
Position (kb) 3750
3751
3752 Strain fitness (log2 ratio) -2
-1
0
1 at 3749.302 kb on - strand, within Xcc-8004.3880.1 at 3749.302 kb on - strand, within Xcc-8004.3880.1 at 3749.397 kb on + strand, within Xcc-8004.3880.1 at 3749.398 kb on - strand, within Xcc-8004.3880.1 at 3749.430 kb on - strand at 3749.430 kb on - strand at 3749.430 kb on - strand at 3749.493 kb on - strand at 3749.502 kb on + strand at 3749.525 kb on + strand at 3749.610 kb on + strand, within Xcc-8004.3881.1 at 3749.650 kb on - strand, within Xcc-8004.3881.1 at 3749.730 kb on + strand, within Xcc-8004.3881.1 at 3749.730 kb on + strand, within Xcc-8004.3881.1 at 3749.757 kb on + strand, within Xcc-8004.3881.1 at 3749.888 kb on + strand at 3749.889 kb on - strand at 3749.889 kb on - strand at 3749.893 kb on - strand at 3749.970 kb on - strand, within Xcc-8004.3882.1 at 3749.978 kb on - strand, within Xcc-8004.3882.1 at 3750.029 kb on + strand, within Xcc-8004.3882.1 at 3750.030 kb on - strand, within Xcc-8004.3882.1 at 3750.454 kb on + strand, within Xcc-8004.3883.1 at 3750.454 kb on + strand, within Xcc-8004.3883.1 at 3750.454 kb on + strand, within Xcc-8004.3883.1 at 3750.455 kb on - strand, within Xcc-8004.3883.1 at 3750.455 kb on - strand, within Xcc-8004.3883.1 at 3750.514 kb on + strand, within Xcc-8004.3883.1 at 3750.616 kb on + strand, within Xcc-8004.3883.1 at 3750.617 kb on - strand, within Xcc-8004.3883.1 at 3750.617 kb on - strand, within Xcc-8004.3883.1 at 3750.617 kb on - strand, within Xcc-8004.3883.1 at 3750.866 kb on - strand, within Xcc-8004.3883.1 at 3751.127 kb on - strand at 3751.127 kb on - strand at 3751.185 kb on + strand at 3751.185 kb on + strand at 3751.185 kb on + strand at 3751.185 kb on + strand at 3751.186 kb on - strand at 3751.193 kb on + strand at 3751.205 kb on + strand at 3751.205 kb on + strand at 3751.312 kb on + strand at 3751.669 kb on + strand, within Xcc-8004.3884.1 at 3751.775 kb on + strand, within Xcc-8004.3884.1 at 3751.776 kb on - strand, within Xcc-8004.3884.1 at 3751.799 kb on - strand, within Xcc-8004.3884.1 at 3751.800 kb on + strand, within Xcc-8004.3884.1 at 3751.800 kb on + strand, within Xcc-8004.3884.1 at 3751.801 kb on - strand, within Xcc-8004.3884.1 at 3752.089 kb on - strand, within Xcc-8004.3884.1 at 3752.089 kb on - strand, within Xcc-8004.3884.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 3,749,302 - Xcc-8004.3880.1 0.64 -0.6 3,749,302 - Xcc-8004.3880.1 0.64 -0.2 3,749,397 + Xcc-8004.3880.1 0.87 +0.2 3,749,398 - Xcc-8004.3880.1 0.87 -0.1 3,749,430 - -0.2 3,749,430 - +0.5 3,749,430 - -0.3 3,749,493 - +0.2 3,749,502 + -0.4 3,749,525 + -0.3 3,749,610 + Xcc-8004.3881.1 0.28 +0.5 3,749,650 - Xcc-8004.3881.1 0.40 +0.4 3,749,730 + Xcc-8004.3881.1 0.63 -0.3 3,749,730 + Xcc-8004.3881.1 0.63 +0.5 3,749,757 + Xcc-8004.3881.1 0.71 +0.5 3,749,888 + -1.1 3,749,889 - +0.4 3,749,889 - +0.6 3,749,893 - -0.5 3,749,970 - Xcc-8004.3882.1 0.24 +0.0 3,749,978 - Xcc-8004.3882.1 0.26 -1.1 3,750,029 + Xcc-8004.3882.1 0.41 -0.5 3,750,030 - Xcc-8004.3882.1 0.42 -0.4 3,750,454 + Xcc-8004.3883.1 0.21 -0.3 3,750,454 + Xcc-8004.3883.1 0.21 -0.7 3,750,454 + Xcc-8004.3883.1 0.21 -0.9 3,750,455 - Xcc-8004.3883.1 0.21 +0.5 3,750,455 - Xcc-8004.3883.1 0.21 +0.4 3,750,514 + Xcc-8004.3883.1 0.28 -1.1 3,750,616 + Xcc-8004.3883.1 0.40 -0.6 3,750,617 - Xcc-8004.3883.1 0.40 -0.4 3,750,617 - Xcc-8004.3883.1 0.40 -0.9 3,750,617 - Xcc-8004.3883.1 0.40 -1.1 3,750,866 - Xcc-8004.3883.1 0.69 +0.1 3,751,127 - +0.6 3,751,127 - +0.3 3,751,185 + -0.3 3,751,185 + -2.4 3,751,185 + +0.5 3,751,185 + +0.7 3,751,186 - -0.6 3,751,193 + +0.5 3,751,205 + +0.4 3,751,205 + +1.1 3,751,312 + +1.0 3,751,669 + Xcc-8004.3884.1 0.15 +0.3 3,751,775 + Xcc-8004.3884.1 0.20 -0.9 3,751,776 - Xcc-8004.3884.1 0.20 -0.6 3,751,799 - Xcc-8004.3884.1 0.21 +0.7 3,751,800 + Xcc-8004.3884.1 0.21 -1.3 3,751,800 + Xcc-8004.3884.1 0.21 -0.8 3,751,801 - Xcc-8004.3884.1 0.22 +0.6 3,752,089 - Xcc-8004.3884.1 0.35 +0.6 3,752,089 - Xcc-8004.3884.1 0.35 -0.3
Or see this region's nucleotide sequence