Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3693.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3692.1 and Xcc-8004.3693.1 overlap by 4 nucleotides Xcc-8004.3692.1: Xcc-8004.3692.1 - Beta-galactosidase (EC 3.2.1.23), at 3,574,081 to 3,575,289 Xcc-8004.3692.1 Xcc-8004.3693.1: Xcc-8004.3693.1 - Beta-galactosidase (EC 3.2.1.23), at 3,575,286 to 3,577,853 Xcc-8004.3693.1 Position (kb) 3575 3576 3577 3578Strain fitness (log2 ratio) -2 -1 0 1 2at 3574.328 kb on - strand, within Xcc-8004.3692.1at 3574.328 kb on - strand, within Xcc-8004.3692.1at 3574.389 kb on - strand, within Xcc-8004.3692.1at 3574.405 kb on + strand, within Xcc-8004.3692.1at 3574.507 kb on + strand, within Xcc-8004.3692.1at 3574.508 kb on - strand, within Xcc-8004.3692.1at 3574.508 kb on - strand, within Xcc-8004.3692.1at 3574.804 kb on + strand, within Xcc-8004.3692.1at 3574.804 kb on + strand, within Xcc-8004.3692.1at 3574.804 kb on + strand, within Xcc-8004.3692.1at 3574.804 kb on + strand, within Xcc-8004.3692.1at 3574.805 kb on - strand, within Xcc-8004.3692.1at 3574.807 kb on + strand, within Xcc-8004.3692.1at 3574.808 kb on - strand, within Xcc-8004.3692.1at 3575.005 kb on + strand, within Xcc-8004.3692.1at 3575.006 kb on - strand, within Xcc-8004.3692.1at 3575.006 kb on - strand, within Xcc-8004.3692.1at 3575.194 kb on + strandat 3575.194 kb on + strandat 3575.194 kb on + strandat 3575.195 kb on - strandat 3575.767 kb on - strand, within Xcc-8004.3693.1at 3575.932 kb on - strand, within Xcc-8004.3693.1at 3575.932 kb on - strand, within Xcc-8004.3693.1at 3575.991 kb on + strand, within Xcc-8004.3693.1at 3575.991 kb on + strand, within Xcc-8004.3693.1at 3575.992 kb on - strand, within Xcc-8004.3693.1at 3575.992 kb on - strand, within Xcc-8004.3693.1at 3576.010 kb on - strand, within Xcc-8004.3693.1at 3576.010 kb on - strand, within Xcc-8004.3693.1at 3576.181 kb on - strand, within Xcc-8004.3693.1at 3576.307 kb on - strand, within Xcc-8004.3693.1at 3576.307 kb on - strand, within Xcc-8004.3693.1at 3576.409 kb on + strand, within Xcc-8004.3693.1at 3576.410 kb on - strand, within Xcc-8004.3693.1at 3576.446 kb on + strand, within Xcc-8004.3693.1at 3576.446 kb on + strand, within Xcc-8004.3693.1at 3576.447 kb on - strand, within Xcc-8004.3693.1at 3576.809 kb on + strand, within Xcc-8004.3693.1at 3576.810 kb on - strand, within Xcc-8004.3693.1at 3576.876 kb on + strand, within Xcc-8004.3693.1at 3576.877 kb on - strand, within Xcc-8004.3693.1at 3576.877 kb on - strand, within Xcc-8004.3693.1at 3576.912 kb on + strand, within Xcc-8004.3693.1at 3576.930 kb on + strand, within Xcc-8004.3693.1at 3576.930 kb on + strand, within Xcc-8004.3693.1at 3576.931 kb on - strand, within Xcc-8004.3693.1at 3576.931 kb on - strand, within Xcc-8004.3693.1at 3576.973 kb on - strand, within Xcc-8004.3693.1at 3576.973 kb on - strand, within Xcc-8004.3693.1at 3577.059 kb on + strand, within Xcc-8004.3693.1at 3577.060 kb on - strand, within Xcc-8004.3693.1at 3577.060 kb on - strand, within Xcc-8004.3693.1at 3577.077 kb on + strand, within Xcc-8004.3693.1at 3577.134 kb on + strand, within Xcc-8004.3693.1at 3577.135 kb on - strand, within Xcc-8004.3693.1at 3577.135 kb on - strand, within Xcc-8004.3693.1at 3577.135 kb on - strand, within Xcc-8004.3693.1at 3577.178 kb on + strand, within Xcc-8004.3693.1at 3577.178 kb on + strand, within Xcc-8004.3693.1at 3577.179 kb on - strand, within Xcc-8004.3693.1at 3577.203 kb on + strand, within Xcc-8004.3693.1at 3577.203 kb on + strand, within Xcc-8004.3693.1at 3577.204 kb on - strand, within Xcc-8004.3693.1at 3577.342 kb on + strand, within Xcc-8004.3693.1at 3577.343 kb on - strand, within Xcc-8004.3693.1at 3577.343 kb on - strand, within Xcc-8004.3693.1at 3577.343 kb on - strand, within Xcc-8004.3693.1at 3577.597 kb on + strandat 3577.598 kb on - strandat 3577.727 kb on + strandat 3577.728 kb on - strandat 3577.728 kb on - strandat 3577.948 kb on - strandat 3577.948 kb on - strandat 3577.987 kb on - strandat 3578.034 kb on + strandat 3578.035 kb on - strandat 3578.035 kb on - strandat 3578.035 kb on - strandat 3578.229 kb on + strandat 3578.230 kb on - strandat 3578.230 kb on - strandat 3578.368 kb on + strandat 3578.431 kb on - strandat 3578.431 kb on - strandat 3578.466 kb on - strandat 3578.591 kb on + strandat 3578.606 kb on + strandat 3578.662 kb on + strandat 3578.768 kb on - strandat 3578.787 kb on + strandat 3578.803 kb on - strandat 3578.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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3,574,328 - Xcc-8004.3692.1 0.20 -0.2
3,574,328 - Xcc-8004.3692.1 0.20 -0.9
3,574,389 - Xcc-8004.3692.1 0.25 -0.3
3,574,405 + Xcc-8004.3692.1 0.27 +1.0
3,574,507 + Xcc-8004.3692.1 0.35 +0.1
3,574,508 - Xcc-8004.3692.1 0.35 +0.0
3,574,508 - Xcc-8004.3692.1 0.35 -0.7
3,574,804 + Xcc-8004.3692.1 0.60 +0.6
3,574,804 + Xcc-8004.3692.1 0.60 -0.0
3,574,804 + Xcc-8004.3692.1 0.60 -0.5
3,574,804 + Xcc-8004.3692.1 0.60 -0.2
3,574,805 - Xcc-8004.3692.1 0.60 +1.1
3,574,807 + Xcc-8004.3692.1 0.60 -0.9
3,574,808 - Xcc-8004.3692.1 0.60 -0.9
3,575,005 + Xcc-8004.3692.1 0.76 +0.3
3,575,006 - Xcc-8004.3692.1 0.77 -1.0
3,575,006 - Xcc-8004.3692.1 0.77 +0.1
3,575,194 + +0.1
3,575,194 + +0.4
3,575,194 + -1.4
3,575,195 - -1.7
3,575,767 - Xcc-8004.3693.1 0.19 +0.5
3,575,932 - Xcc-8004.3693.1 0.25 +0.5
3,575,932 - Xcc-8004.3693.1 0.25 +1.1
3,575,991 + Xcc-8004.3693.1 0.27 +0.4
3,575,991 + Xcc-8004.3693.1 0.27 +0.9
3,575,992 - Xcc-8004.3693.1 0.27 -1.3
3,575,992 - Xcc-8004.3693.1 0.27 +2.1
3,576,010 - Xcc-8004.3693.1 0.28 +0.7
3,576,010 - Xcc-8004.3693.1 0.28 +0.4
3,576,181 - Xcc-8004.3693.1 0.35 -0.7
3,576,307 - Xcc-8004.3693.1 0.40 +0.4
3,576,307 - Xcc-8004.3693.1 0.40 -0.5
3,576,409 + Xcc-8004.3693.1 0.44 +0.2
3,576,410 - Xcc-8004.3693.1 0.44 +0.5
3,576,446 + Xcc-8004.3693.1 0.45 +0.4
3,576,446 + Xcc-8004.3693.1 0.45 -1.3
3,576,447 - Xcc-8004.3693.1 0.45 -0.5
3,576,809 + Xcc-8004.3693.1 0.59 -0.3
3,576,810 - Xcc-8004.3693.1 0.59 +0.4
3,576,876 + Xcc-8004.3693.1 0.62 +0.6
3,576,877 - Xcc-8004.3693.1 0.62 -0.5
3,576,877 - Xcc-8004.3693.1 0.62 +0.4
3,576,912 + Xcc-8004.3693.1 0.63 -0.2
3,576,930 + Xcc-8004.3693.1 0.64 +0.0
3,576,930 + Xcc-8004.3693.1 0.64 +1.0
3,576,931 - Xcc-8004.3693.1 0.64 -0.7
3,576,931 - Xcc-8004.3693.1 0.64 +1.3
3,576,973 - Xcc-8004.3693.1 0.66 -1.2
3,576,973 - Xcc-8004.3693.1 0.66 -0.8
3,577,059 + Xcc-8004.3693.1 0.69 +1.0
3,577,060 - Xcc-8004.3693.1 0.69 -0.9
3,577,060 - Xcc-8004.3693.1 0.69 -0.5
3,577,077 + Xcc-8004.3693.1 0.70 -1.5
3,577,134 + Xcc-8004.3693.1 0.72 -0.9
3,577,135 - Xcc-8004.3693.1 0.72 -0.4
3,577,135 - Xcc-8004.3693.1 0.72 +0.0
3,577,135 - Xcc-8004.3693.1 0.72 +0.7
3,577,178 + Xcc-8004.3693.1 0.74 +0.1
3,577,178 + Xcc-8004.3693.1 0.74 +0.8
3,577,179 - Xcc-8004.3693.1 0.74 -0.6
3,577,203 + Xcc-8004.3693.1 0.75 +1.1
3,577,203 + Xcc-8004.3693.1 0.75 -0.5
3,577,204 - Xcc-8004.3693.1 0.75 +0.4
3,577,342 + Xcc-8004.3693.1 0.80 -0.0
3,577,343 - Xcc-8004.3693.1 0.80 +0.6
3,577,343 - Xcc-8004.3693.1 0.80 -0.3
3,577,343 - Xcc-8004.3693.1 0.80 +2.4
3,577,597 + -0.9
3,577,598 - +1.1
3,577,727 + +0.3
3,577,728 - +0.2
3,577,728 - -0.3
3,577,948 - +0.5
3,577,948 - +0.6
3,577,987 - -0.2
3,578,034 + -0.5
3,578,035 - -1.3
3,578,035 - +0.5
3,578,035 - -0.5
3,578,229 + +0.8
3,578,230 - +2.0
3,578,230 - -1.0
3,578,368 + +0.4
3,578,431 - -1.2
3,578,431 - -0.6
3,578,466 - +0.6
3,578,591 + -1.9
3,578,606 + -0.7
3,578,662 + -0.9
3,578,768 - -0.2
3,578,787 + +1.0
3,578,803 - -0.3
3,578,803 - -0.7

Or see this region's nucleotide sequence