Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2297.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2296.1 and Xcc-8004.2297.1 are separated by 93 nucleotidesXcc-8004.2297.1 and Xcc-8004.2298.1 are separated by 75 nucleotidesXcc-8004.2298.1 and Xcc-8004.2299.1 overlap by 4 nucleotides Xcc-8004.2296.1: Xcc-8004.2296.1 - FIG01211180: hypothetical protein, at 2,247,905 to 2,248,810 Xcc-8004.2296.1 Xcc-8004.2297.1: Xcc-8004.2297.1 - FIG01210827: hypothetical protein, at 2,248,904 to 2,249,194 Xcc-8004.2297.1 Xcc-8004.2298.1: Xcc-8004.2298.1 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 2,249,270 to 2,250,088 Xcc-8004.2298.1 Xcc-8004.2299.1: Xcc-8004.2299.1 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 2,250,085 to 2,251,494 Xcc-8004.2299.1 Position (kb) 2248 2249 2250Strain fitness (log2 ratio) -2 -1 0 1 2at 2248.126 kb on - strand, within Xcc-8004.2296.1at 2248.400 kb on + strand, within Xcc-8004.2296.1at 2248.400 kb on + strand, within Xcc-8004.2296.1at 2248.400 kb on + strand, within Xcc-8004.2296.1at 2248.400 kb on + strand, within Xcc-8004.2296.1at 2248.401 kb on - strand, within Xcc-8004.2296.1at 2248.401 kb on - strand, within Xcc-8004.2296.1at 2248.401 kb on - strand, within Xcc-8004.2296.1at 2248.401 kb on - strand, within Xcc-8004.2296.1at 2248.452 kb on + strand, within Xcc-8004.2296.1at 2248.452 kb on + strand, within Xcc-8004.2296.1at 2248.452 kb on + strand, within Xcc-8004.2296.1at 2248.453 kb on - strand, within Xcc-8004.2296.1at 2248.565 kb on + strand, within Xcc-8004.2296.1at 2248.566 kb on - strand, within Xcc-8004.2296.1at 2248.571 kb on + strand, within Xcc-8004.2296.1at 2248.571 kb on + strand, within Xcc-8004.2296.1at 2248.572 kb on - strand, within Xcc-8004.2296.1at 2248.599 kb on - strand, within Xcc-8004.2296.1at 2248.622 kb on + strand, within Xcc-8004.2296.1at 2248.622 kb on + strand, within Xcc-8004.2296.1at 2249.123 kb on - strand, within Xcc-8004.2297.1at 2249.156 kb on + strand, within Xcc-8004.2297.1at 2249.156 kb on + strand, within Xcc-8004.2297.1at 2249.156 kb on + strand, within Xcc-8004.2297.1at 2249.157 kb on - strand, within Xcc-8004.2297.1at 2249.157 kb on - strand, within Xcc-8004.2297.1at 2249.157 kb on - strand, within Xcc-8004.2297.1at 2249.157 kb on - strand, within Xcc-8004.2297.1at 2249.157 kb on - strand, within Xcc-8004.2297.1at 2249.192 kb on + strandat 2249.193 kb on - strandat 2249.397 kb on + strand, within Xcc-8004.2298.1at 2249.424 kb on + strand, within Xcc-8004.2298.1at 2249.424 kb on + strand, within Xcc-8004.2298.1at 2249.425 kb on - strand, within Xcc-8004.2298.1at 2249.425 kb on - strand, within Xcc-8004.2298.1at 2249.496 kb on + strand, within Xcc-8004.2298.1at 2249.496 kb on + strand, within Xcc-8004.2298.1at 2249.496 kb on + strand, within Xcc-8004.2298.1at 2249.497 kb on - strand, within Xcc-8004.2298.1at 2249.497 kb on - strand, within Xcc-8004.2298.1at 2249.497 kb on - strand, within Xcc-8004.2298.1at 2249.497 kb on - strand, within Xcc-8004.2298.1at 2249.505 kb on + strand, within Xcc-8004.2298.1at 2249.505 kb on + strand, within Xcc-8004.2298.1at 2249.505 kb on + strand, within Xcc-8004.2298.1at 2249.505 kb on + strand, within Xcc-8004.2298.1at 2249.506 kb on - strand, within Xcc-8004.2298.1at 2249.838 kb on + strand, within Xcc-8004.2298.1at 2249.838 kb on + strand, within Xcc-8004.2298.1at 2249.838 kb on + strand, within Xcc-8004.2298.1at 2249.839 kb on - strand, within Xcc-8004.2298.1at 2249.839 kb on - strand, within Xcc-8004.2298.1at 2249.863 kb on + strand, within Xcc-8004.2298.1at 2249.863 kb on + strand, within Xcc-8004.2298.1at 2249.864 kb on - strand, within Xcc-8004.2298.1at 2249.864 kb on - strand, within Xcc-8004.2298.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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2,248,126 - Xcc-8004.2296.1 0.24 +0.2
2,248,400 + Xcc-8004.2296.1 0.55 +0.9
2,248,400 + Xcc-8004.2296.1 0.55 +0.1
2,248,400 + Xcc-8004.2296.1 0.55 +0.3
2,248,400 + Xcc-8004.2296.1 0.55 +0.3
2,248,401 - Xcc-8004.2296.1 0.55 -2.4
2,248,401 - Xcc-8004.2296.1 0.55 +1.2
2,248,401 - Xcc-8004.2296.1 0.55 +0.6
2,248,401 - Xcc-8004.2296.1 0.55 -0.5
2,248,452 + Xcc-8004.2296.1 0.60 -0.2
2,248,452 + Xcc-8004.2296.1 0.60 -2.6
2,248,452 + Xcc-8004.2296.1 0.60 -0.2
2,248,453 - Xcc-8004.2296.1 0.60 +1.4
2,248,565 + Xcc-8004.2296.1 0.73 +0.3
2,248,566 - Xcc-8004.2296.1 0.73 +0.2
2,248,571 + Xcc-8004.2296.1 0.74 +0.5
2,248,571 + Xcc-8004.2296.1 0.74 -1.0
2,248,572 - Xcc-8004.2296.1 0.74 -0.9
2,248,599 - Xcc-8004.2296.1 0.77 +0.5
2,248,622 + Xcc-8004.2296.1 0.79 -0.2
2,248,622 + Xcc-8004.2296.1 0.79 +0.3
2,249,123 - Xcc-8004.2297.1 0.75 -0.5
2,249,156 + Xcc-8004.2297.1 0.87 -0.1
2,249,156 + Xcc-8004.2297.1 0.87 -0.4
2,249,156 + Xcc-8004.2297.1 0.87 -0.6
2,249,157 - Xcc-8004.2297.1 0.87 -0.2
2,249,157 - Xcc-8004.2297.1 0.87 -0.5
2,249,157 - Xcc-8004.2297.1 0.87 -0.6
2,249,157 - Xcc-8004.2297.1 0.87 -1.3
2,249,157 - Xcc-8004.2297.1 0.87 -0.7
2,249,192 + -0.4
2,249,193 - -0.2
2,249,397 + Xcc-8004.2298.1 0.16 +0.5
2,249,424 + Xcc-8004.2298.1 0.19 -0.6
2,249,424 + Xcc-8004.2298.1 0.19 +0.3
2,249,425 - Xcc-8004.2298.1 0.19 -0.6
2,249,425 - Xcc-8004.2298.1 0.19 +0.2
2,249,496 + Xcc-8004.2298.1 0.28 -1.4
2,249,496 + Xcc-8004.2298.1 0.28 +1.6
2,249,496 + Xcc-8004.2298.1 0.28 -0.3
2,249,497 - Xcc-8004.2298.1 0.28 +0.6
2,249,497 - Xcc-8004.2298.1 0.28 -0.3
2,249,497 - Xcc-8004.2298.1 0.28 -0.0
2,249,497 - Xcc-8004.2298.1 0.28 +0.3
2,249,505 + Xcc-8004.2298.1 0.29 +2.4
2,249,505 + Xcc-8004.2298.1 0.29 -0.3
2,249,505 + Xcc-8004.2298.1 0.29 -0.3
2,249,505 + Xcc-8004.2298.1 0.29 +0.8
2,249,506 - Xcc-8004.2298.1 0.29 -1.0
2,249,838 + Xcc-8004.2298.1 0.69 -0.1
2,249,838 + Xcc-8004.2298.1 0.69 +0.1
2,249,838 + Xcc-8004.2298.1 0.69 +0.3
2,249,839 - Xcc-8004.2298.1 0.69 +0.8
2,249,839 - Xcc-8004.2298.1 0.69 +0.2
2,249,863 + Xcc-8004.2298.1 0.72 +0.5
2,249,863 + Xcc-8004.2298.1 0.72 +0.1
2,249,864 - Xcc-8004.2298.1 0.73 -0.3
2,249,864 - Xcc-8004.2298.1 0.73 +0.5

Or see this region's nucleotide sequence