Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2130.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2129.1 and Xcc-8004.2130.1 are separated by 184 nucleotidesXcc-8004.2130.1 and Xcc-8004.2131.1 overlap by 4 nucleotides Xcc-8004.2129.1: Xcc-8004.2129.1 - 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22), at 2,041,005 to 2,041,913 Xcc-8004.2129.1 Xcc-8004.2130.1: Xcc-8004.2130.1 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26), at 2,042,098 to 2,043,693 Xcc-8004.2130.1 Xcc-8004.2131.1: Xcc-8004.2131.1 - Predicted 4-hydroxyproline dipeptidase, at 2,043,690 to 2,044,889 Xcc-8004.2131.1 Position (kb) 2042 2043 2044Strain fitness (log2 ratio) -2 -1 0 1 2at 2041.211 kb on - strand, within Xcc-8004.2129.1at 2041.335 kb on + strand, within Xcc-8004.2129.1at 2041.335 kb on + strand, within Xcc-8004.2129.1at 2041.335 kb on + strand, within Xcc-8004.2129.1at 2041.335 kb on + strand, within Xcc-8004.2129.1at 2041.335 kb on + strand, within Xcc-8004.2129.1at 2041.336 kb on - strand, within Xcc-8004.2129.1at 2041.341 kb on + strand, within Xcc-8004.2129.1at 2041.341 kb on + strand, within Xcc-8004.2129.1at 2041.341 kb on + strand, within Xcc-8004.2129.1at 2041.341 kb on + strand, within Xcc-8004.2129.1at 2041.342 kb on - strand, within Xcc-8004.2129.1at 2041.342 kb on - strand, within Xcc-8004.2129.1at 2041.416 kb on + strand, within Xcc-8004.2129.1at 2041.434 kb on + strand, within Xcc-8004.2129.1at 2041.434 kb on + strand, within Xcc-8004.2129.1at 2041.435 kb on - strand, within Xcc-8004.2129.1at 2041.435 kb on - strand, within Xcc-8004.2129.1at 2041.435 kb on - strand, within Xcc-8004.2129.1at 2041.435 kb on - strand, within Xcc-8004.2129.1at 2041.501 kb on + strand, within Xcc-8004.2129.1at 2041.502 kb on - strand, within Xcc-8004.2129.1at 2041.502 kb on - strand, within Xcc-8004.2129.1at 2041.502 kb on - strand, within Xcc-8004.2129.1at 2041.502 kb on - strand, within Xcc-8004.2129.1at 2041.502 kb on - strand, within Xcc-8004.2129.1at 2041.650 kb on + strand, within Xcc-8004.2129.1at 2041.650 kb on + strand, within Xcc-8004.2129.1at 2041.719 kb on + strand, within Xcc-8004.2129.1at 2041.719 kb on + strand, within Xcc-8004.2129.1at 2041.719 kb on + strand, within Xcc-8004.2129.1at 2041.719 kb on + strand, within Xcc-8004.2129.1at 2041.719 kb on + strand, within Xcc-8004.2129.1at 2041.720 kb on - strand, within Xcc-8004.2129.1at 2041.720 kb on - strand, within Xcc-8004.2129.1at 2041.945 kb on + strandat 2041.946 kb on - strandat 2041.946 kb on - strandat 2041.973 kb on + strandat 2041.973 kb on + strandat 2041.973 kb on + strandat 2041.973 kb on + strandat 2041.973 kb on + strandat 2041.973 kb on + strandat 2041.973 kb on + strandat 2041.973 kb on + strandat 2041.974 kb on - strandat 2041.974 kb on - strandat 2041.989 kb on + strandat 2042.081 kb on + strandat 2042.441 kb on + strand, within Xcc-8004.2130.1at 2042.442 kb on - strand, within Xcc-8004.2130.1at 2042.442 kb on - strand, within Xcc-8004.2130.1at 2042.442 kb on - strand, within Xcc-8004.2130.1at 2042.442 kb on - strand, within Xcc-8004.2130.1at 2042.470 kb on + strand, within Xcc-8004.2130.1at 2042.471 kb on - strand, within Xcc-8004.2130.1at 2042.563 kb on - strand, within Xcc-8004.2130.1at 2042.743 kb on + strand, within Xcc-8004.2130.1at 2042.743 kb on + strand, within Xcc-8004.2130.1at 2042.743 kb on + strand, within Xcc-8004.2130.1at 2042.744 kb on - strand, within Xcc-8004.2130.1at 2042.744 kb on - strand, within Xcc-8004.2130.1at 2042.873 kb on - strand, within Xcc-8004.2130.1at 2042.873 kb on - strand, within Xcc-8004.2130.1at 2042.873 kb on - strand, within Xcc-8004.2130.1at 2043.197 kb on - strand, within Xcc-8004.2130.1at 2043.362 kb on - strand, within Xcc-8004.2130.1at 2043.577 kb on + strandat 2043.577 kb on + strandat 2043.577 kb on + strandat 2043.577 kb on + strandat 2043.577 kb on + strandat 2043.577 kb on + strandat 2043.577 kb on + strandat 2043.578 kb on - strandat 2043.578 kb on - strandat 2043.578 kb on - strandat 2043.578 kb on - strandat 2043.784 kb on - strandat 2043.795 kb on - strandat 2043.871 kb on - strand, within Xcc-8004.2131.1at 2044.036 kb on - strand, within Xcc-8004.2131.1at 2044.494 kb on + strand, within Xcc-8004.2131.1at 2044.495 kb on - strand, within Xcc-8004.2131.1at 2044.495 kb on - strand, within Xcc-8004.2131.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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2,041,211 - Xcc-8004.2129.1 0.23 -0.0
2,041,335 + Xcc-8004.2129.1 0.36 -0.3
2,041,335 + Xcc-8004.2129.1 0.36 -1.3
2,041,335 + Xcc-8004.2129.1 0.36 -0.5
2,041,335 + Xcc-8004.2129.1 0.36 +0.2
2,041,335 + Xcc-8004.2129.1 0.36 +0.1
2,041,336 - Xcc-8004.2129.1 0.36 +0.4
2,041,341 + Xcc-8004.2129.1 0.37 +0.1
2,041,341 + Xcc-8004.2129.1 0.37 +0.2
2,041,341 + Xcc-8004.2129.1 0.37 +2.0
2,041,341 + Xcc-8004.2129.1 0.37 +0.6
2,041,342 - Xcc-8004.2129.1 0.37 +1.9
2,041,342 - Xcc-8004.2129.1 0.37 +1.0
2,041,416 + Xcc-8004.2129.1 0.45 -1.7
2,041,434 + Xcc-8004.2129.1 0.47 +0.5
2,041,434 + Xcc-8004.2129.1 0.47 +0.3
2,041,435 - Xcc-8004.2129.1 0.47 -0.6
2,041,435 - Xcc-8004.2129.1 0.47 -0.3
2,041,435 - Xcc-8004.2129.1 0.47 -0.3
2,041,435 - Xcc-8004.2129.1 0.47 +1.8
2,041,501 + Xcc-8004.2129.1 0.55 +0.0
2,041,502 - Xcc-8004.2129.1 0.55 -1.8
2,041,502 - Xcc-8004.2129.1 0.55 +0.1
2,041,502 - Xcc-8004.2129.1 0.55 +0.0
2,041,502 - Xcc-8004.2129.1 0.55 +0.2
2,041,502 - Xcc-8004.2129.1 0.55 -0.2
2,041,650 + Xcc-8004.2129.1 0.71 +0.9
2,041,650 + Xcc-8004.2129.1 0.71 -1.3
2,041,719 + Xcc-8004.2129.1 0.79 -0.2
2,041,719 + Xcc-8004.2129.1 0.79 -1.0
2,041,719 + Xcc-8004.2129.1 0.79 +2.0
2,041,719 + Xcc-8004.2129.1 0.79 -0.5
2,041,719 + Xcc-8004.2129.1 0.79 +0.0
2,041,720 - Xcc-8004.2129.1 0.79 +0.0
2,041,720 - Xcc-8004.2129.1 0.79 +0.2
2,041,945 + +0.1
2,041,946 - -0.4
2,041,946 - +0.2
2,041,973 + -0.5
2,041,973 + +0.3
2,041,973 + -0.3
2,041,973 + -0.6
2,041,973 + +0.5
2,041,973 + +0.3
2,041,973 + -0.1
2,041,973 + +0.1
2,041,974 - +0.4
2,041,974 - +0.2
2,041,989 + +0.1
2,042,081 + -0.4
2,042,441 + Xcc-8004.2130.1 0.21 -0.3
2,042,442 - Xcc-8004.2130.1 0.22 -0.2
2,042,442 - Xcc-8004.2130.1 0.22 +0.7
2,042,442 - Xcc-8004.2130.1 0.22 +0.0
2,042,442 - Xcc-8004.2130.1 0.22 -1.4
2,042,470 + Xcc-8004.2130.1 0.23 +1.0
2,042,471 - Xcc-8004.2130.1 0.23 -0.5
2,042,563 - Xcc-8004.2130.1 0.29 +0.6
2,042,743 + Xcc-8004.2130.1 0.40 -0.5
2,042,743 + Xcc-8004.2130.1 0.40 +0.3
2,042,743 + Xcc-8004.2130.1 0.40 +0.3
2,042,744 - Xcc-8004.2130.1 0.40 +2.0
2,042,744 - Xcc-8004.2130.1 0.40 +1.7
2,042,873 - Xcc-8004.2130.1 0.49 +1.1
2,042,873 - Xcc-8004.2130.1 0.49 +0.5
2,042,873 - Xcc-8004.2130.1 0.49 +1.6
2,043,197 - Xcc-8004.2130.1 0.69 +0.4
2,043,362 - Xcc-8004.2130.1 0.79 +1.6
2,043,577 + -1.3
2,043,577 + -0.1
2,043,577 + +0.0
2,043,577 + +0.2
2,043,577 + -0.3
2,043,577 + +0.0
2,043,577 + -1.0
2,043,578 - -2.3
2,043,578 - -1.5
2,043,578 - -0.0
2,043,578 - +0.7
2,043,784 - -1.3
2,043,795 - +0.2
2,043,871 - Xcc-8004.2131.1 0.15 +0.9
2,044,036 - Xcc-8004.2131.1 0.29 +0.3
2,044,494 + Xcc-8004.2131.1 0.67 +0.0
2,044,495 - Xcc-8004.2131.1 0.67 -0.4
2,044,495 - Xcc-8004.2131.1 0.67 +0.9

Or see this region's nucleotide sequence