Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.204.1 and Xcc-8004.205.1 are separated by 140 nucleotides Xcc-8004.205.1 and Xcc-8004.206.1 are separated by 889 nucleotides
Xcc-8004.204.1: Xcc-8004.204.1 - Beta-xylosidase (EC 3.2.1.37), at 196,883 to 198,463
Xcc-8004.204.1
Xcc-8004.205.1: Xcc-8004.205.1 - Ribose operon repressor, at 198,604 to 199,662
Xcc-8004.205.1
Xcc-8004.206.1: Xcc-8004.206.1 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17), at 200,552 to 201,406
Xcc-8004.206.1
Position (kb) 198
199
200 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.757 kb on - strand, within Xcc-8004.204.1 at 197.757 kb on - strand, within Xcc-8004.204.1 at 197.765 kb on + strand, within Xcc-8004.204.1 at 197.765 kb on + strand, within Xcc-8004.204.1 at 198.083 kb on + strand, within Xcc-8004.204.1 at 198.083 kb on + strand, within Xcc-8004.204.1 at 198.143 kb on + strand, within Xcc-8004.204.1 at 198.143 kb on + strand, within Xcc-8004.204.1 at 198.143 kb on + strand, within Xcc-8004.204.1 at 198.144 kb on - strand, within Xcc-8004.204.1 at 198.144 kb on - strand, within Xcc-8004.204.1 at 198.144 kb on - strand, within Xcc-8004.204.1 at 198.144 kb on - strand, within Xcc-8004.204.1 at 198.158 kb on + strand, within Xcc-8004.204.1 at 198.159 kb on - strand, within Xcc-8004.204.1 at 198.159 kb on - strand, within Xcc-8004.204.1 at 198.159 kb on - strand, within Xcc-8004.204.1 at 198.329 kb on + strand at 198.330 kb on - strand at 198.330 kb on - strand at 198.404 kb on + strand at 198.404 kb on + strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.603 kb on + strand at 198.603 kb on + strand at 198.603 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.853 kb on + strand, within Xcc-8004.205.1 at 198.853 kb on + strand, within Xcc-8004.205.1 at 198.853 kb on + strand, within Xcc-8004.205.1 at 198.853 kb on + strand, within Xcc-8004.205.1 at 198.854 kb on - strand, within Xcc-8004.205.1 at 198.874 kb on + strand, within Xcc-8004.205.1 at 198.874 kb on + strand, within Xcc-8004.205.1 at 198.874 kb on + strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.893 kb on - strand, within Xcc-8004.205.1 at 198.893 kb on - strand, within Xcc-8004.205.1 at 198.893 kb on - strand, within Xcc-8004.205.1 at 198.967 kb on + strand, within Xcc-8004.205.1 at 198.967 kb on + strand, within Xcc-8004.205.1 at 198.968 kb on - strand, within Xcc-8004.205.1 at 198.968 kb on - strand, within Xcc-8004.205.1 at 198.968 kb on - strand, within Xcc-8004.205.1 at 198.968 kb on - strand, within Xcc-8004.205.1 at 198.969 kb on + strand, within Xcc-8004.205.1 at 198.969 kb on + strand, within Xcc-8004.205.1 at 198.969 kb on + strand, within Xcc-8004.205.1 at 199.171 kb on + strand, within Xcc-8004.205.1 at 199.172 kb on - strand, within Xcc-8004.205.1 at 199.172 kb on - strand, within Xcc-8004.205.1 at 199.172 kb on - strand, within Xcc-8004.205.1 at 199.172 kb on - strand, within Xcc-8004.205.1 at 199.172 kb on - strand, within Xcc-8004.205.1 at 199.226 kb on - strand, within Xcc-8004.205.1 at 199.318 kb on + strand, within Xcc-8004.205.1 at 199.319 kb on - strand, within Xcc-8004.205.1 at 199.319 kb on - strand, within Xcc-8004.205.1 at 199.416 kb on + strand, within Xcc-8004.205.1 at 199.416 kb on + strand, within Xcc-8004.205.1 at 199.417 kb on - strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.477 kb on + strand, within Xcc-8004.205.1 at 199.478 kb on - strand, within Xcc-8004.205.1 at 199.478 kb on - strand, within Xcc-8004.205.1 at 199.598 kb on + strand at 199.599 kb on - strand at 199.668 kb on + strand at 199.668 kb on + strand at 199.668 kb on + strand at 199.668 kb on + strand at 199.668 kb on + strand at 199.668 kb on + strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.792 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.839 kb on - strand at 199.839 kb on - strand at 199.839 kb on - strand at 199.849 kb on + strand at 199.849 kb on + strand at 199.849 kb on + strand at 199.849 kb on + strand at 199.849 kb on + strand at 199.849 kb on + strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.902 kb on + strand at 199.903 kb on - strand at 199.903 kb on - strand at 200.036 kb on + strand at 200.037 kb on - strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.147 kb on + strand at 200.147 kb on + strand at 200.147 kb on + strand at 200.147 kb on + strand at 200.147 kb on + strand at 200.148 kb on - strand at 200.148 kb on - strand at 200.148 kb on - strand at 200.186 kb on + strand at 200.186 kb on + strand at 200.186 kb on + strand at 200.187 kb on - strand at 200.267 kb on + strand at 200.267 kb on + strand at 200.268 kb on - strand at 200.268 kb on - strand at 200.314 kb on - strand at 200.314 kb on - strand at 200.314 kb on - strand at 200.314 kb on - strand at 200.314 kb on - strand at 200.314 kb on - strand at 200.498 kb on + strand at 200.499 kb on - strand at 200.561 kb on + strand at 200.561 kb on + strand at 200.561 kb on + strand at 200.561 kb on + strand at 200.562 kb on - strand at 200.576 kb on + strand at 200.576 kb on + strand at 200.577 kb on - strand at 200.577 kb on - strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.634 kb on - strand at 200.634 kb on - strand at 200.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 197,756 + Xcc-8004.204.1 0.55 +1.0 197,756 + Xcc-8004.204.1 0.55 -0.4 197,756 + Xcc-8004.204.1 0.55 +0.1 197,756 + Xcc-8004.204.1 0.55 +0.4 197,756 + Xcc-8004.204.1 0.55 -0.8 197,756 + Xcc-8004.204.1 0.55 -0.1 197,756 + Xcc-8004.204.1 0.55 -0.3 197,756 + Xcc-8004.204.1 0.55 -0.6 197,756 + Xcc-8004.204.1 0.55 -0.7 197,757 - Xcc-8004.204.1 0.55 -1.3 197,757 - Xcc-8004.204.1 0.55 +0.9 197,765 + Xcc-8004.204.1 0.56 -0.2 197,765 + Xcc-8004.204.1 0.56 -1.8 198,083 + Xcc-8004.204.1 0.76 +1.5 198,083 + Xcc-8004.204.1 0.76 -0.3 198,143 + Xcc-8004.204.1 0.80 -0.4 198,143 + Xcc-8004.204.1 0.80 -0.2 198,143 + Xcc-8004.204.1 0.80 -0.3 198,144 - Xcc-8004.204.1 0.80 -1.3 198,144 - Xcc-8004.204.1 0.80 -0.0 198,144 - Xcc-8004.204.1 0.80 -0.6 198,144 - Xcc-8004.204.1 0.80 -0.8 198,158 + Xcc-8004.204.1 0.81 -0.2 198,159 - Xcc-8004.204.1 0.81 -0.3 198,159 - Xcc-8004.204.1 0.81 -1.0 198,159 - Xcc-8004.204.1 0.81 -0.2 198,329 + -0.3 198,330 - -0.1 198,330 - -1.1 198,404 + -0.7 198,404 + -0.5 198,405 - -0.8 198,405 - +0.1 198,405 - -0.5 198,405 - +0.4 198,405 - +1.2 198,405 - -0.9 198,405 - -0.4 198,405 - +1.2 198,603 + +0.0 198,603 + -0.5 198,603 + -0.3 198,659 + -1.3 198,659 + -0.5 198,659 + +0.3 198,659 + +0.5 198,659 + +1.1 198,659 + +0.5 198,659 + -0.9 198,659 + -1.0 198,659 + -0.1 198,660 - +0.0 198,660 - +0.5 198,660 - -2.4 198,660 - -0.9 198,660 - -0.8 198,660 - -0.4 198,660 - -1.1 198,660 - +0.5 198,853 + Xcc-8004.205.1 0.24 -1.8 198,853 + Xcc-8004.205.1 0.24 -0.8 198,853 + Xcc-8004.205.1 0.24 +1.5 198,853 + Xcc-8004.205.1 0.24 -3.0 198,854 - Xcc-8004.205.1 0.24 -1.2 198,874 + Xcc-8004.205.1 0.25 -0.8 198,874 + Xcc-8004.205.1 0.25 +0.3 198,874 + Xcc-8004.205.1 0.25 +0.7 198,875 - Xcc-8004.205.1 0.26 -2.9 198,875 - Xcc-8004.205.1 0.26 -1.0 198,875 - Xcc-8004.205.1 0.26 -1.0 198,875 - Xcc-8004.205.1 0.26 -0.6 198,875 - Xcc-8004.205.1 0.26 -0.7 198,875 - Xcc-8004.205.1 0.26 -0.1 198,875 - Xcc-8004.205.1 0.26 -1.7 198,875 - Xcc-8004.205.1 0.26 -1.3 198,893 - Xcc-8004.205.1 0.27 -1.1 198,893 - Xcc-8004.205.1 0.27 +0.0 198,893 - Xcc-8004.205.1 0.27 -0.1 198,967 + Xcc-8004.205.1 0.34 -0.7 198,967 + Xcc-8004.205.1 0.34 -1.0 198,968 - Xcc-8004.205.1 0.34 -0.9 198,968 - Xcc-8004.205.1 0.34 -2.3 198,968 - Xcc-8004.205.1 0.34 -0.1 198,968 - Xcc-8004.205.1 0.34 -0.6 198,969 + Xcc-8004.205.1 0.34 -0.2 198,969 + Xcc-8004.205.1 0.34 -0.5 198,969 + Xcc-8004.205.1 0.34 -0.4 199,171 + Xcc-8004.205.1 0.54 -0.9 199,172 - Xcc-8004.205.1 0.54 -0.9 199,172 - Xcc-8004.205.1 0.54 -1.7 199,172 - Xcc-8004.205.1 0.54 -0.8 199,172 - Xcc-8004.205.1 0.54 +0.4 199,172 - Xcc-8004.205.1 0.54 +0.2 199,226 - Xcc-8004.205.1 0.59 -0.3 199,318 + Xcc-8004.205.1 0.67 -0.0 199,319 - Xcc-8004.205.1 0.68 -0.3 199,319 - Xcc-8004.205.1 0.68 -0.8 199,416 + Xcc-8004.205.1 0.77 -1.3 199,416 + Xcc-8004.205.1 0.77 -1.3 199,417 - Xcc-8004.205.1 0.77 -0.8 199,420 + Xcc-8004.205.1 0.77 +0.6 199,420 + Xcc-8004.205.1 0.77 -2.2 199,420 + Xcc-8004.205.1 0.77 -0.6 199,420 + Xcc-8004.205.1 0.77 -1.1 199,420 + Xcc-8004.205.1 0.77 +0.6 199,420 + Xcc-8004.205.1 0.77 -1.4 199,420 + Xcc-8004.205.1 0.77 -1.3 199,420 + Xcc-8004.205.1 0.77 -0.7 199,420 + Xcc-8004.205.1 0.77 -0.1 199,420 + Xcc-8004.205.1 0.77 -0.6 199,420 + Xcc-8004.205.1 0.77 -1.3 199,420 + Xcc-8004.205.1 0.77 -1.1 199,420 + Xcc-8004.205.1 0.77 -0.6 199,420 + Xcc-8004.205.1 0.77 -0.2 199,420 + Xcc-8004.205.1 0.77 -1.2 199,420 + Xcc-8004.205.1 0.77 -0.7 199,420 + Xcc-8004.205.1 0.77 +0.3 199,421 - Xcc-8004.205.1 0.77 -1.2 199,421 - Xcc-8004.205.1 0.77 +0.0 199,421 - Xcc-8004.205.1 0.77 -0.4 199,421 - Xcc-8004.205.1 0.77 -0.8 199,421 - Xcc-8004.205.1 0.77 -0.4 199,421 - Xcc-8004.205.1 0.77 -0.7 199,421 - Xcc-8004.205.1 0.77 -1.1 199,421 - Xcc-8004.205.1 0.77 -0.9 199,421 - Xcc-8004.205.1 0.77 -2.0 199,421 - Xcc-8004.205.1 0.77 -0.2 199,477 + Xcc-8004.205.1 0.82 -0.6 199,478 - Xcc-8004.205.1 0.83 -0.2 199,478 - Xcc-8004.205.1 0.83 -3.9 199,598 + -0.1 199,599 - -0.1 199,668 + -0.2 199,668 + +1.0 199,668 + +0.6 199,668 + -0.5 199,668 + -0.0 199,668 + +1.0 199,669 - -0.5 199,669 - -0.6 199,669 - +0.2 199,669 - +0.6 199,669 - -1.3 199,669 - +1.9 199,669 - -0.0 199,669 - -1.1 199,792 + -0.5 199,834 + +0.3 199,834 + +0.1 199,834 + -0.7 199,834 + +0.5 199,834 + +0.6 199,834 + +0.1 199,834 + -0.0 199,834 + -0.9 199,834 + +0.6 199,834 + -0.2 199,834 + -0.7 199,834 + +0.3 199,834 + -0.4 199,834 + +0.2 199,834 + +0.3 199,834 + -0.8 199,835 - +0.2 199,835 - -0.7 199,835 - -0.5 199,835 - -1.2 199,835 - -0.7 199,835 - +0.0 199,835 - -0.2 199,835 - +0.4 199,835 - +0.2 199,835 - +0.1 199,835 - -0.3 199,839 - -0.4 199,839 - +0.8 199,839 - +0.3 199,849 + -0.2 199,849 + +1.9 199,849 + -0.3 199,849 + +0.3 199,849 + -1.3 199,849 + +0.3 199,850 - -0.7 199,850 - +0.4 199,850 - +0.7 199,850 - -0.3 199,850 - +1.2 199,850 - -0.4 199,850 - -0.2 199,850 - +0.5 199,887 + -0.1 199,887 + -0.4 199,887 + -0.5 199,887 + -0.7 199,887 + -0.0 199,887 + +0.1 199,887 + +0.4 199,902 + +0.6 199,903 - +0.0 199,903 - -0.6 200,036 + +0.5 200,037 - -0.3 200,047 + -0.9 200,047 + -0.5 200,047 + +0.2 200,047 + -1.2 200,047 + +0.1 200,047 + -0.2 200,047 + -0.9 200,047 + -0.9 200,047 + +0.2 200,047 + +0.1 200,047 + -0.4 200,048 - -1.5 200,048 - -0.0 200,048 - +0.7 200,048 - +0.1 200,048 - +0.2 200,048 - -0.5 200,048 - -0.7 200,048 - +0.1 200,048 - +1.3 200,048 - -0.1 200,048 - +0.5 200,048 - +0.9 200,048 - -0.3 200,048 - -0.0 200,048 - -1.0 200,048 - +0.2 200,048 - -0.6 200,048 - +0.3 200,087 - -0.2 200,087 - +1.5 200,087 - -0.2 200,087 - -0.1 200,087 - +0.4 200,087 - -0.6 200,087 - -2.0 200,087 - -0.2 200,147 + +0.2 200,147 + +0.1 200,147 + -0.7 200,147 + -1.8 200,147 + -0.0 200,148 - -0.5 200,148 - -0.1 200,148 - -0.1 200,186 + -0.1 200,186 + +1.1 200,186 + -0.2 200,187 - -0.7 200,267 + -0.2 200,267 + +0.4 200,268 - +0.1 200,268 - -1.3 200,314 - +0.4 200,314 - +0.0 200,314 - -0.2 200,314 - -0.8 200,314 - +0.1 200,314 - -0.8 200,498 + -0.9 200,499 - -1.3 200,561 + -0.0 200,561 + +0.4 200,561 + +0.2 200,561 + +0.4 200,562 - -0.0 200,576 + -0.2 200,576 + -0.3 200,577 - -1.3 200,577 - +0.4 200,633 + +0.3 200,633 + -0.0 200,633 + -1.0 200,633 + +0.1 200,633 + -0.0 200,633 + +0.5 200,633 + -0.6 200,634 - -0.4 200,634 - -0.1 200,634 - -0.5
Or see this region's nucleotide sequence