Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1816.1 and Xcc-8004.1818.1 overlap by 1 nucleotides Xcc-8004.1818.1 and Xcc-8004.1819.1 are separated by 12 nucleotides
Xcc-8004.1816.1: Xcc-8004.1816.1 - Oxidoreductase alpha (Molybdopterin) subunit, at 1,751,169 to 1,754,141
Xcc-8004.1816.1
Xcc-8004.1818.1: Xcc-8004.1818.1 - FIG00554193: hypothetical protein, at 1,754,141 to 1,754,626
Xcc-8004.1818.1
Xcc-8004.1819.1: Xcc-8004.1819.1 - putative Cytochrome bd2, subunit I, at 1,754,639 to 1,756,012
Xcc-8004.1819.1
Position (kb) 1754
1755 Strain fitness (log2 ratio) -2
-1
0
1 at 1753.426 kb on - strand, within Xcc-8004.1816.1 at 1753.426 kb on - strand, within Xcc-8004.1816.1 at 1753.426 kb on - strand, within Xcc-8004.1816.1 at 1753.428 kb on - strand, within Xcc-8004.1816.1 at 1753.428 kb on - strand, within Xcc-8004.1816.1 at 1753.470 kb on - strand, within Xcc-8004.1816.1 at 1753.491 kb on + strand, within Xcc-8004.1816.1 at 1753.564 kb on - strand, within Xcc-8004.1816.1 at 1753.962 kb on + strand at 1753.962 kb on + strand at 1753.963 kb on - strand at 1754.027 kb on + strand at 1754.027 kb on + strand at 1754.097 kb on + strand at 1754.097 kb on + strand at 1754.097 kb on + strand at 1754.097 kb on + strand at 1754.098 kb on - strand at 1754.098 kb on - strand at 1754.098 kb on - strand at 1754.098 kb on - strand at 1754.159 kb on + strand at 1754.159 kb on + strand at 1754.160 kb on - strand at 1754.390 kb on + strand, within Xcc-8004.1818.1 at 1754.390 kb on + strand, within Xcc-8004.1818.1 at 1754.390 kb on + strand, within Xcc-8004.1818.1 at 1754.390 kb on + strand, within Xcc-8004.1818.1 at 1754.391 kb on - strand, within Xcc-8004.1818.1 at 1754.391 kb on - strand, within Xcc-8004.1818.1 at 1754.789 kb on + strand, within Xcc-8004.1819.1 at 1754.789 kb on + strand, within Xcc-8004.1819.1 at 1754.789 kb on + strand, within Xcc-8004.1819.1 at 1754.789 kb on + strand, within Xcc-8004.1819.1 at 1754.790 kb on - strand, within Xcc-8004.1819.1 at 1754.790 kb on - strand, within Xcc-8004.1819.1 at 1754.790 kb on - strand, within Xcc-8004.1819.1 at 1754.790 kb on - strand, within Xcc-8004.1819.1 at 1754.790 kb on - strand, within Xcc-8004.1819.1 at 1754.790 kb on - strand, within Xcc-8004.1819.1 at 1754.790 kb on - strand, within Xcc-8004.1819.1 at 1754.801 kb on + strand, within Xcc-8004.1819.1 at 1754.802 kb on - strand, within Xcc-8004.1819.1 at 1754.802 kb on - strand, within Xcc-8004.1819.1 at 1754.802 kb on - strand, within Xcc-8004.1819.1 at 1754.802 kb on - strand, within Xcc-8004.1819.1 at 1754.802 kb on - strand, within Xcc-8004.1819.1 at 1754.808 kb on - strand, within Xcc-8004.1819.1 at 1755.202 kb on + strand, within Xcc-8004.1819.1 at 1755.202 kb on + strand, within Xcc-8004.1819.1 at 1755.202 kb on + strand, within Xcc-8004.1819.1 at 1755.202 kb on + strand, within Xcc-8004.1819.1 at 1755.203 kb on - strand, within Xcc-8004.1819.1 at 1755.203 kb on - strand, within Xcc-8004.1819.1 at 1755.376 kb on + strand, within Xcc-8004.1819.1 at 1755.377 kb on - strand, within Xcc-8004.1819.1 at 1755.478 kb on + strand, within Xcc-8004.1819.1 at 1755.513 kb on + strand, within Xcc-8004.1819.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 1,753,426 - Xcc-8004.1816.1 0.76 -1.0 1,753,426 - Xcc-8004.1816.1 0.76 -0.6 1,753,426 - Xcc-8004.1816.1 0.76 -0.2 1,753,428 - Xcc-8004.1816.1 0.76 -0.7 1,753,428 - Xcc-8004.1816.1 0.76 -0.8 1,753,470 - Xcc-8004.1816.1 0.77 +0.6 1,753,491 + Xcc-8004.1816.1 0.78 -0.6 1,753,564 - Xcc-8004.1816.1 0.81 +0.9 1,753,962 + -0.1 1,753,962 + -0.5 1,753,963 - +0.3 1,754,027 + +0.0 1,754,027 + +1.0 1,754,097 + +1.4 1,754,097 + +1.0 1,754,097 + -1.8 1,754,097 + -0.8 1,754,098 - +1.3 1,754,098 - +0.9 1,754,098 - +0.2 1,754,098 - +0.6 1,754,159 + +0.3 1,754,159 + +1.0 1,754,160 - -0.3 1,754,390 + Xcc-8004.1818.1 0.51 -0.1 1,754,390 + Xcc-8004.1818.1 0.51 -0.4 1,754,390 + Xcc-8004.1818.1 0.51 -0.4 1,754,390 + Xcc-8004.1818.1 0.51 -1.6 1,754,391 - Xcc-8004.1818.1 0.51 -2.7 1,754,391 - Xcc-8004.1818.1 0.51 -1.3 1,754,789 + Xcc-8004.1819.1 0.11 -0.3 1,754,789 + Xcc-8004.1819.1 0.11 +0.3 1,754,789 + Xcc-8004.1819.1 0.11 +1.0 1,754,789 + Xcc-8004.1819.1 0.11 -1.3 1,754,790 - Xcc-8004.1819.1 0.11 +0.2 1,754,790 - Xcc-8004.1819.1 0.11 -0.4 1,754,790 - Xcc-8004.1819.1 0.11 -0.6 1,754,790 - Xcc-8004.1819.1 0.11 -0.7 1,754,790 - Xcc-8004.1819.1 0.11 +0.8 1,754,790 - Xcc-8004.1819.1 0.11 -2.1 1,754,790 - Xcc-8004.1819.1 0.11 -0.8 1,754,801 + Xcc-8004.1819.1 0.12 +0.3 1,754,802 - Xcc-8004.1819.1 0.12 -0.3 1,754,802 - Xcc-8004.1819.1 0.12 +0.1 1,754,802 - Xcc-8004.1819.1 0.12 -0.0 1,754,802 - Xcc-8004.1819.1 0.12 +0.4 1,754,802 - Xcc-8004.1819.1 0.12 +0.6 1,754,808 - Xcc-8004.1819.1 0.12 -1.2 1,755,202 + Xcc-8004.1819.1 0.41 -1.4 1,755,202 + Xcc-8004.1819.1 0.41 -0.6 1,755,202 + Xcc-8004.1819.1 0.41 +0.6 1,755,202 + Xcc-8004.1819.1 0.41 -0.3 1,755,203 - Xcc-8004.1819.1 0.41 -1.0 1,755,203 - Xcc-8004.1819.1 0.41 -2.7 1,755,376 + Xcc-8004.1819.1 0.54 +0.4 1,755,377 - Xcc-8004.1819.1 0.54 -0.1 1,755,478 + Xcc-8004.1819.1 0.61 -0.2 1,755,513 + Xcc-8004.1819.1 0.64 -1.2
Or see this region's nucleotide sequence