Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1693.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1691.1 and Xcc-8004.1692.1 are separated by 5 nucleotidesXcc-8004.1692.1 and Xcc-8004.1693.1 overlap by 8 nucleotidesXcc-8004.1693.1 and Xcc-8004.1694.1 are separated by 48 nucleotides Xcc-8004.1691.1: Xcc-8004.1691.1 - FIG019175: putative membrane protein, at 1,624,440 to 1,625,084 Xcc-8004.1691.1 Xcc-8004.1692.1: Xcc-8004.1692.1 - FOG: TPR repeat, SEL1 subfamily, at 1,625,090 to 1,625,848 Xcc-8004.1692.1 Xcc-8004.1693.1: Xcc-8004.1693.1 - Iron-uptake factor PiuC, at 1,625,841 to 1,626,527 Xcc-8004.1693.1 Xcc-8004.1694.1: Xcc-8004.1694.1 - Ferrichrome-iron receptor, at 1,626,576 to 1,628,894 Xcc-8004.1694.1 Position (kb) 1625 1626 1627Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1624.877 kb on + strand, within Xcc-8004.1691.1at 1624.878 kb on - strand, within Xcc-8004.1691.1at 1625.394 kb on + strand, within Xcc-8004.1692.1at 1625.448 kb on + strand, within Xcc-8004.1692.1at 1625.448 kb on + strand, within Xcc-8004.1692.1at 1625.449 kb on - strand, within Xcc-8004.1692.1at 1625.499 kb on + strand, within Xcc-8004.1692.1at 1625.500 kb on - strand, within Xcc-8004.1692.1at 1625.500 kb on - strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.518 kb on - strand, within Xcc-8004.1692.1at 1625.518 kb on - strand, within Xcc-8004.1692.1at 1625.518 kb on - strand, within Xcc-8004.1692.1at 1625.518 kb on - strand, within Xcc-8004.1692.1at 1625.518 kb on - strand, within Xcc-8004.1692.1at 1625.715 kb on + strand, within Xcc-8004.1692.1at 1625.772 kb on - strand, within Xcc-8004.1692.1at 1625.876 kb on - strandat 1625.876 kb on - strandat 1626.044 kb on + strand, within Xcc-8004.1693.1at 1626.044 kb on + strand, within Xcc-8004.1693.1at 1626.044 kb on + strand, within Xcc-8004.1693.1at 1626.044 kb on + strand, within Xcc-8004.1693.1at 1626.045 kb on - strand, within Xcc-8004.1693.1at 1626.045 kb on - strand, within Xcc-8004.1693.1at 1626.064 kb on + strand, within Xcc-8004.1693.1at 1626.109 kb on + strand, within Xcc-8004.1693.1at 1626.109 kb on + strand, within Xcc-8004.1693.1at 1626.109 kb on + strand, within Xcc-8004.1693.1at 1626.109 kb on + strand, within Xcc-8004.1693.1at 1626.110 kb on - strand, within Xcc-8004.1693.1at 1626.110 kb on - strand, within Xcc-8004.1693.1at 1626.110 kb on - strand, within Xcc-8004.1693.1at 1626.110 kb on - strand, within Xcc-8004.1693.1at 1626.142 kb on + strand, within Xcc-8004.1693.1at 1626.143 kb on - strand, within Xcc-8004.1693.1at 1626.245 kb on - strand, within Xcc-8004.1693.1at 1626.289 kb on + strand, within Xcc-8004.1693.1at 1626.289 kb on + strand, within Xcc-8004.1693.1at 1626.289 kb on + strand, within Xcc-8004.1693.1at 1626.290 kb on - strand, within Xcc-8004.1693.1at 1626.324 kb on - strand, within Xcc-8004.1693.1at 1626.324 kb on - strand, within Xcc-8004.1693.1at 1626.324 kb on - strand, within Xcc-8004.1693.1at 1626.694 kb on + strandat 1626.694 kb on + strandat 1626.695 kb on - strandat 1626.695 kb on - strandat 1626.695 kb on - strandat 1626.695 kb on - strandat 1626.695 kb on - strandat 1626.697 kb on + strandat 1626.698 kb on - strandat 1626.698 kb on - strandat 1626.698 kb on - strandat 1626.784 kb on + strandat 1626.844 kb on + strand, within Xcc-8004.1694.1at 1626.883 kb on + strand, within Xcc-8004.1694.1at 1626.883 kb on + strand, within Xcc-8004.1694.1at 1626.884 kb on - strand, within Xcc-8004.1694.1at 1626.884 kb on - strand, within Xcc-8004.1694.1at 1627.009 kb on + strand, within Xcc-8004.1694.1at 1627.010 kb on - strand, within Xcc-8004.1694.1at 1627.010 kb on - strand, within Xcc-8004.1694.1at 1627.132 kb on + strand, within Xcc-8004.1694.1at 1627.132 kb on + strand, within Xcc-8004.1694.1at 1627.132 kb on + strand, within Xcc-8004.1694.1at 1627.132 kb on + strand, within Xcc-8004.1694.1at 1627.133 kb on - strand, within Xcc-8004.1694.1at 1627.324 kb on + strand, within Xcc-8004.1694.1at 1627.333 kb on + strand, within Xcc-8004.1694.1at 1627.334 kb on - strand, within Xcc-8004.1694.1at 1627.334 kb on - strand, within Xcc-8004.1694.1at 1627.363 kb on - strand, within Xcc-8004.1694.1at 1627.456 kb on + strand, within Xcc-8004.1694.1at 1627.456 kb on + strand, within Xcc-8004.1694.1at 1627.456 kb on + strand, within Xcc-8004.1694.1at 1627.456 kb on + strand, within Xcc-8004.1694.1at 1627.457 kb on - strand, within Xcc-8004.1694.1at 1627.457 kb on - strand, within Xcc-8004.1694.1at 1627.457 kb on - strand, within Xcc-8004.1694.1at 1627.457 kb on - strand, within Xcc-8004.1694.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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1,624,877 + Xcc-8004.1691.1 0.68 -0.8
1,624,878 - Xcc-8004.1691.1 0.68 -0.3
1,625,394 + Xcc-8004.1692.1 0.40 +1.3
1,625,448 + Xcc-8004.1692.1 0.47 -0.2
1,625,448 + Xcc-8004.1692.1 0.47 -1.3
1,625,449 - Xcc-8004.1692.1 0.47 -0.7
1,625,499 + Xcc-8004.1692.1 0.54 -1.7
1,625,500 - Xcc-8004.1692.1 0.54 -1.1
1,625,500 - Xcc-8004.1692.1 0.54 +0.7
1,625,517 + Xcc-8004.1692.1 0.56 +1.2
1,625,517 + Xcc-8004.1692.1 0.56 -1.2
1,625,517 + Xcc-8004.1692.1 0.56 +0.5
1,625,517 + Xcc-8004.1692.1 0.56 +1.2
1,625,517 + Xcc-8004.1692.1 0.56 +0.3
1,625,517 + Xcc-8004.1692.1 0.56 -1.2
1,625,517 + Xcc-8004.1692.1 0.56 +1.4
1,625,518 - Xcc-8004.1692.1 0.56 -0.1
1,625,518 - Xcc-8004.1692.1 0.56 -1.4
1,625,518 - Xcc-8004.1692.1 0.56 +0.4
1,625,518 - Xcc-8004.1692.1 0.56 -1.2
1,625,518 - Xcc-8004.1692.1 0.56 +2.6
1,625,715 + Xcc-8004.1692.1 0.82 -0.7
1,625,772 - Xcc-8004.1692.1 0.90 +0.3
1,625,876 - +1.0
1,625,876 - -0.7
1,626,044 + Xcc-8004.1693.1 0.30 -1.9
1,626,044 + Xcc-8004.1693.1 0.30 -0.8
1,626,044 + Xcc-8004.1693.1 0.30 -0.1
1,626,044 + Xcc-8004.1693.1 0.30 +0.8
1,626,045 - Xcc-8004.1693.1 0.30 -1.7
1,626,045 - Xcc-8004.1693.1 0.30 -1.4
1,626,064 + Xcc-8004.1693.1 0.32 +0.2
1,626,109 + Xcc-8004.1693.1 0.39 -1.6
1,626,109 + Xcc-8004.1693.1 0.39 -0.9
1,626,109 + Xcc-8004.1693.1 0.39 +0.1
1,626,109 + Xcc-8004.1693.1 0.39 -2.4
1,626,110 - Xcc-8004.1693.1 0.39 -0.9
1,626,110 - Xcc-8004.1693.1 0.39 -0.9
1,626,110 - Xcc-8004.1693.1 0.39 -0.2
1,626,110 - Xcc-8004.1693.1 0.39 -0.5
1,626,142 + Xcc-8004.1693.1 0.44 -3.0
1,626,143 - Xcc-8004.1693.1 0.44 -0.3
1,626,245 - Xcc-8004.1693.1 0.59 -0.2
1,626,289 + Xcc-8004.1693.1 0.65 -1.4
1,626,289 + Xcc-8004.1693.1 0.65 -1.4
1,626,289 + Xcc-8004.1693.1 0.65 +1.0
1,626,290 - Xcc-8004.1693.1 0.65 -1.6
1,626,324 - Xcc-8004.1693.1 0.70 -0.9
1,626,324 - Xcc-8004.1693.1 0.70 -0.9
1,626,324 - Xcc-8004.1693.1 0.70 -1.2
1,626,694 + -1.5
1,626,694 + +0.3
1,626,695 - -0.7
1,626,695 - -1.4
1,626,695 - +0.8
1,626,695 - -0.2
1,626,695 - -0.8
1,626,697 + -1.3
1,626,698 - -1.4
1,626,698 - -0.5
1,626,698 - +0.1
1,626,784 + -0.2
1,626,844 + Xcc-8004.1694.1 0.12 -0.1
1,626,883 + Xcc-8004.1694.1 0.13 -0.1
1,626,883 + Xcc-8004.1694.1 0.13 +0.7
1,626,884 - Xcc-8004.1694.1 0.13 +0.3
1,626,884 - Xcc-8004.1694.1 0.13 -0.4
1,627,009 + Xcc-8004.1694.1 0.19 -0.8
1,627,010 - Xcc-8004.1694.1 0.19 -1.4
1,627,010 - Xcc-8004.1694.1 0.19 -2.3
1,627,132 + Xcc-8004.1694.1 0.24 -0.6
1,627,132 + Xcc-8004.1694.1 0.24 +1.4
1,627,132 + Xcc-8004.1694.1 0.24 -0.8
1,627,132 + Xcc-8004.1694.1 0.24 -0.8
1,627,133 - Xcc-8004.1694.1 0.24 +0.1
1,627,324 + Xcc-8004.1694.1 0.32 +0.4
1,627,333 + Xcc-8004.1694.1 0.33 -0.6
1,627,334 - Xcc-8004.1694.1 0.33 -0.4
1,627,334 - Xcc-8004.1694.1 0.33 +0.4
1,627,363 - Xcc-8004.1694.1 0.34 +0.6
1,627,456 + Xcc-8004.1694.1 0.38 -0.4
1,627,456 + Xcc-8004.1694.1 0.38 +0.3
1,627,456 + Xcc-8004.1694.1 0.38 -0.6
1,627,456 + Xcc-8004.1694.1 0.38 -1.8
1,627,457 - Xcc-8004.1694.1 0.38 -2.1
1,627,457 - Xcc-8004.1694.1 0.38 -1.4
1,627,457 - Xcc-8004.1694.1 0.38 -1.9
1,627,457 - Xcc-8004.1694.1 0.38 +0.0

Or see this region's nucleotide sequence