Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17990 and RS_RS17995 are separated by 23 nucleotides RS_RS17995 and RS_RS18000 are separated by 1 nucleotides RS_RS18000 and RS_RS18005 are separated by 110 nucleotides RS_RS18005 and RS_RS18010 are separated by 29 nucleotides
RS_RS17990: RS_RS17990 - DUF4123 domain-containing protein, at 218,999 to 219,835
_RS17990
RS_RS17995: RS_RS17995 - DUF3304 domain-containing protein, at 219,859 to 220,410
_RS17995
RS_RS18000: RS_RS18000 - DUF2235 domain-containing protein, at 220,412 to 222,634
_RS18000
RS_RS18005: RS_RS18005 - hypothetical protein, at 222,745 to 223,527
_RS18005
RS_RS18010: RS_RS18010 - conjugal transfer protein, at 223,557 to 224,021
_RS18010
Position (kb) 220
221
222
223 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 219.714 kb on - strand, within RS_RS17990 at 219.714 kb on - strand, within RS_RS17990 at 219.723 kb on + strand, within RS_RS17990 at 219.723 kb on + strand, within RS_RS17990 at 219.816 kb on + strand at 219.817 kb on - strand at 219.817 kb on - strand at 220.001 kb on - strand, within RS_RS17995 at 220.001 kb on - strand, within RS_RS17995 at 220.078 kb on - strand, within RS_RS17995 at 220.078 kb on - strand, within RS_RS17995 at 220.078 kb on - strand, within RS_RS17995 at 220.078 kb on - strand, within RS_RS17995 at 220.078 kb on - strand, within RS_RS17995 at 220.093 kb on - strand, within RS_RS17995 at 220.093 kb on - strand, within RS_RS17995 at 220.131 kb on - strand, within RS_RS17995 at 220.184 kb on - strand, within RS_RS17995 at 220.211 kb on - strand, within RS_RS17995 at 220.211 kb on - strand, within RS_RS17995 at 220.223 kb on - strand, within RS_RS17995 at 220.223 kb on - strand, within RS_RS17995 at 220.286 kb on - strand, within RS_RS17995 at 220.373 kb on - strand at 220.561 kb on + strand at 220.561 kb on + strand at 220.561 kb on + strand at 220.561 kb on + strand at 220.561 kb on + strand at 220.561 kb on + strand at 220.561 kb on + strand at 220.562 kb on - strand at 220.562 kb on - strand at 220.562 kb on - strand at 220.562 kb on - strand at 220.562 kb on - strand at 220.562 kb on - strand at 220.565 kb on + strand at 220.565 kb on + strand at 220.591 kb on + strand at 220.592 kb on - strand at 220.694 kb on - strand, within RS_RS18000 at 220.699 kb on + strand, within RS_RS18000 at 220.699 kb on + strand, within RS_RS18000 at 220.757 kb on - strand, within RS_RS18000 at 220.757 kb on - strand, within RS_RS18000 at 220.770 kb on + strand, within RS_RS18000 at 220.770 kb on + strand, within RS_RS18000 at 220.771 kb on - strand, within RS_RS18000 at 220.771 kb on - strand, within RS_RS18000 at 220.776 kb on + strand, within RS_RS18000 at 220.788 kb on + strand, within RS_RS18000 at 220.789 kb on - strand, within RS_RS18000 at 220.790 kb on + strand, within RS_RS18000 at 220.796 kb on + strand, within RS_RS18000 at 220.796 kb on + strand, within RS_RS18000 at 220.803 kb on - strand, within RS_RS18000 at 220.803 kb on - strand, within RS_RS18000 at 220.803 kb on - strand, within RS_RS18000 at 221.030 kb on + strand, within RS_RS18000 at 221.030 kb on + strand, within RS_RS18000 at 221.031 kb on - strand, within RS_RS18000 at 221.031 kb on - strand, within RS_RS18000 at 221.031 kb on - strand, within RS_RS18000 at 221.444 kb on + strand, within RS_RS18000 at 221.534 kb on + strand, within RS_RS18000 at 221.534 kb on + strand, within RS_RS18000 at 221.535 kb on - strand, within RS_RS18000 at 221.639 kb on + strand, within RS_RS18000 at 221.649 kb on - strand, within RS_RS18000 at 221.649 kb on - strand, within RS_RS18000 at 221.726 kb on + strand, within RS_RS18000 at 221.727 kb on - strand, within RS_RS18000 at 221.874 kb on + strand, within RS_RS18000 at 222.026 kb on + strand, within RS_RS18000 at 222.080 kb on + strand, within RS_RS18000 at 222.080 kb on + strand, within RS_RS18000 at 222.080 kb on + strand, within RS_RS18000 at 222.080 kb on + strand, within RS_RS18000 at 222.080 kb on + strand, within RS_RS18000 at 222.080 kb on + strand, within RS_RS18000 at 222.080 kb on + strand, within RS_RS18000 at 222.080 kb on + strand, within RS_RS18000 at 222.080 kb on + strand, within RS_RS18000 at 222.081 kb on - strand, within RS_RS18000 at 222.081 kb on - strand, within RS_RS18000 at 222.081 kb on - strand, within RS_RS18000 at 222.081 kb on - strand, within RS_RS18000 at 222.245 kb on + strand, within RS_RS18000 at 222.327 kb on - strand, within RS_RS18000 at 222.327 kb on - strand, within RS_RS18000 at 222.755 kb on - strand at 222.755 kb on - strand at 222.760 kb on + strand at 222.761 kb on - strand at 222.761 kb on - strand at 222.925 kb on + strand, within RS_RS18005 at 222.926 kb on - strand, within RS_RS18005 at 222.926 kb on - strand, within RS_RS18005 at 223.206 kb on + strand, within RS_RS18005 at 223.222 kb on + strand, within RS_RS18005 at 223.258 kb on + strand, within RS_RS18005 at 223.259 kb on - strand, within RS_RS18005 at 223.291 kb on + strand, within RS_RS18005 at 223.301 kb on - strand, within RS_RS18005 at 223.301 kb on - strand, within RS_RS18005 at 223.301 kb on - strand, within RS_RS18005
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 219,714 - RS_RS17990 0.85 +0.2 219,714 - RS_RS17990 0.85 -1.5 219,723 + RS_RS17990 0.86 -0.5 219,723 + RS_RS17990 0.86 -0.9 219,816 + -0.7 219,817 - +0.8 219,817 - -0.9 220,001 - RS_RS17995 0.26 +1.1 220,001 - RS_RS17995 0.26 -0.7 220,078 - RS_RS17995 0.40 +1.1 220,078 - RS_RS17995 0.40 -2.8 220,078 - RS_RS17995 0.40 -2.5 220,078 - RS_RS17995 0.40 -2.3 220,078 - RS_RS17995 0.40 -0.5 220,093 - RS_RS17995 0.42 -3.9 220,093 - RS_RS17995 0.42 -4.0 220,131 - RS_RS17995 0.49 -1.5 220,184 - RS_RS17995 0.59 -3.0 220,211 - RS_RS17995 0.64 -3.3 220,211 - RS_RS17995 0.64 -4.2 220,223 - RS_RS17995 0.66 -3.1 220,223 - RS_RS17995 0.66 -3.1 220,286 - RS_RS17995 0.77 -2.3 220,373 - -0.3 220,561 + -0.4 220,561 + -0.3 220,561 + -0.2 220,561 + +0.3 220,561 + +0.7 220,561 + +0.0 220,561 + -0.1 220,562 - +0.1 220,562 - -0.7 220,562 - +0.1 220,562 - -0.0 220,562 - -0.7 220,562 - +0.1 220,565 + +0.1 220,565 + -0.3 220,591 + -0.2 220,592 - +0.9 220,694 - RS_RS18000 0.13 +0.2 220,699 + RS_RS18000 0.13 +0.1 220,699 + RS_RS18000 0.13 -0.1 220,757 - RS_RS18000 0.16 +0.0 220,757 - RS_RS18000 0.16 +0.5 220,770 + RS_RS18000 0.16 -0.0 220,770 + RS_RS18000 0.16 -0.3 220,771 - RS_RS18000 0.16 +0.2 220,771 - RS_RS18000 0.16 -0.2 220,776 + RS_RS18000 0.16 +0.2 220,788 + RS_RS18000 0.17 -0.4 220,789 - RS_RS18000 0.17 +0.4 220,790 + RS_RS18000 0.17 +0.1 220,796 + RS_RS18000 0.17 +0.2 220,796 + RS_RS18000 0.17 +0.4 220,803 - RS_RS18000 0.18 +0.1 220,803 - RS_RS18000 0.18 -0.3 220,803 - RS_RS18000 0.18 +0.6 221,030 + RS_RS18000 0.28 -1.5 221,030 + RS_RS18000 0.28 +0.1 221,031 - RS_RS18000 0.28 -0.6 221,031 - RS_RS18000 0.28 +0.2 221,031 - RS_RS18000 0.28 -0.3 221,444 + RS_RS18000 0.46 +0.6 221,534 + RS_RS18000 0.50 -0.5 221,534 + RS_RS18000 0.50 -0.1 221,535 - RS_RS18000 0.51 -0.4 221,639 + RS_RS18000 0.55 -0.5 221,649 - RS_RS18000 0.56 -0.9 221,649 - RS_RS18000 0.56 -0.2 221,726 + RS_RS18000 0.59 -0.6 221,727 - RS_RS18000 0.59 -1.3 221,874 + RS_RS18000 0.66 -0.2 222,026 + RS_RS18000 0.73 -0.9 222,080 + RS_RS18000 0.75 -1.2 222,080 + RS_RS18000 0.75 -0.4 222,080 + RS_RS18000 0.75 -0.3 222,080 + RS_RS18000 0.75 -0.5 222,080 + RS_RS18000 0.75 -0.3 222,080 + RS_RS18000 0.75 -0.0 222,080 + RS_RS18000 0.75 -0.5 222,080 + RS_RS18000 0.75 -0.8 222,080 + RS_RS18000 0.75 -0.7 222,081 - RS_RS18000 0.75 -0.8 222,081 - RS_RS18000 0.75 +0.3 222,081 - RS_RS18000 0.75 +0.4 222,081 - RS_RS18000 0.75 +0.5 222,245 + RS_RS18000 0.82 -0.8 222,327 - RS_RS18000 0.86 +0.0 222,327 - RS_RS18000 0.86 -0.4 222,755 - -0.2 222,755 - +0.3 222,760 + -0.5 222,761 - +0.1 222,761 - +0.1 222,925 + RS_RS18005 0.23 -3.0 222,926 - RS_RS18005 0.23 +0.8 222,926 - RS_RS18005 0.23 -0.1 223,206 + RS_RS18005 0.59 +0.1 223,222 + RS_RS18005 0.61 +0.4 223,258 + RS_RS18005 0.66 -0.3 223,259 - RS_RS18005 0.66 +0.6 223,291 + RS_RS18005 0.70 +0.3 223,301 - RS_RS18005 0.71 -0.7 223,301 - RS_RS18005 0.71 +0.1 223,301 - RS_RS18005 0.71 +0.6
Or see this region's nucleotide sequence