Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS08770

Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS08765 and RS_RS08770 overlap by 4 nucleotidesRS_RS08770 and RS_RS08775 are separated by 200 nucleotides RS_RS08765: RS_RS08765 - sensor histidine kinase, at 1,856,942 to 1,858,357 _RS08765 RS_RS08770: RS_RS08770 - DNA-binding response regulator, at 1,858,354 to 1,859,046 _RS08770 RS_RS08775: RS_RS08775 - porin, at 1,859,247 to 1,860,308 _RS08775 Position (kb) 1858 1859 1860Strain fitness (log2 ratio) -3 -2 -1 0 1at 1857.433 kb on - strand, within RS_RS08765at 1857.666 kb on + strand, within RS_RS08765at 1857.667 kb on - strand, within RS_RS08765at 1857.667 kb on - strand, within RS_RS08765at 1858.008 kb on + strand, within RS_RS08765at 1858.008 kb on + strand, within RS_RS08765at 1858.104 kb on + strand, within RS_RS08765at 1858.105 kb on - strand, within RS_RS08765at 1858.269 kb on + strandat 1858.400 kb on + strandat 1858.469 kb on + strand, within RS_RS08770at 1858.469 kb on + strand, within RS_RS08770at 1858.470 kb on - strand, within RS_RS08770at 1858.646 kb on + strand, within RS_RS08770at 1858.646 kb on + strand, within RS_RS08770at 1858.647 kb on - strand, within RS_RS08770at 1858.754 kb on + strand, within RS_RS08770at 1858.754 kb on + strand, within RS_RS08770at 1858.755 kb on - strand, within RS_RS08770at 1859.115 kb on - strandat 1859.195 kb on + strandat 1859.195 kb on + strandat 1859.196 kb on - strandat 1859.328 kb on + strandat 1859.329 kb on - strandat 1859.355 kb on + strand, within RS_RS08775at 1859.355 kb on + strand, within RS_RS08775at 1859.356 kb on - strand, within RS_RS08775at 1859.356 kb on - strand, within RS_RS08775at 1859.610 kb on + strand, within RS_RS08775at 1859.610 kb on + strand, within RS_RS08775at 1859.610 kb on + strand, within RS_RS08775at 1859.611 kb on - strand, within RS_RS08775at 1859.611 kb on - strand, within RS_RS08775at 1859.628 kb on + strand, within RS_RS08775at 1859.655 kb on + strand, within RS_RS08775at 1859.656 kb on - strand, within RS_RS08775at 1859.656 kb on - strand, within RS_RS08775at 1859.804 kb on + strand, within RS_RS08775at 1859.804 kb on + strand, within RS_RS08775at 1859.805 kb on - strand, within RS_RS08775at 1859.805 kb on - strand, within RS_RS08775at 1859.818 kb on - strand, within RS_RS08775at 1859.835 kb on + strand, within RS_RS08775at 1859.922 kb on + strand, within RS_RS08775at 1859.922 kb on + strand, within RS_RS08775at 1859.952 kb on + strand, within RS_RS08775at 1859.994 kb on + strand, within RS_RS08775at 1859.995 kb on - strand, within RS_RS08775at 1860.038 kb on + strand, within RS_RS08775at 1860.038 kb on + strand, within RS_RS08775at 1860.038 kb on + strand, within RS_RS08775at 1860.042 kb on + strand, within RS_RS08775at 1860.042 kb on + strand, within RS_RS08775at 1860.042 kb on + strand, within RS_RS08775at 1860.043 kb on - strand, within RS_RS08775at 1860.043 kb on - strand, within RS_RS08775

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,857,433 - RS_RS08765 0.35 -1.0
1,857,666 + RS_RS08765 0.51 +0.5
1,857,667 - RS_RS08765 0.51 +0.5
1,857,667 - RS_RS08765 0.51 +0.1
1,858,008 + RS_RS08765 0.75 +0.4
1,858,008 + RS_RS08765 0.75 +0.0
1,858,104 + RS_RS08765 0.82 +0.1
1,858,105 - RS_RS08765 0.82 +0.4
1,858,269 + +0.4
1,858,400 + -0.5
1,858,469 + RS_RS08770 0.17 +0.2
1,858,469 + RS_RS08770 0.17 +0.3
1,858,470 - RS_RS08770 0.17 -2.8
1,858,646 + RS_RS08770 0.42 -0.6
1,858,646 + RS_RS08770 0.42 -0.5
1,858,647 - RS_RS08770 0.42 -0.1
1,858,754 + RS_RS08770 0.58 -0.9
1,858,754 + RS_RS08770 0.58 -0.2
1,858,755 - RS_RS08770 0.58 -0.4
1,859,115 - +0.3
1,859,195 + -0.1
1,859,195 + -0.0
1,859,196 - +0.0
1,859,328 + -0.3
1,859,329 - +0.2
1,859,355 + RS_RS08775 0.10 +0.1
1,859,355 + RS_RS08775 0.10 +0.3
1,859,356 - RS_RS08775 0.10 +0.4
1,859,356 - RS_RS08775 0.10 +0.3
1,859,610 + RS_RS08775 0.34 +0.2
1,859,610 + RS_RS08775 0.34 +0.1
1,859,610 + RS_RS08775 0.34 -0.1
1,859,611 - RS_RS08775 0.34 -0.1
1,859,611 - RS_RS08775 0.34 +0.2
1,859,628 + RS_RS08775 0.36 -0.5
1,859,655 + RS_RS08775 0.38 +0.6
1,859,656 - RS_RS08775 0.39 +0.1
1,859,656 - RS_RS08775 0.39 +0.3
1,859,804 + RS_RS08775 0.52 -0.4
1,859,804 + RS_RS08775 0.52 +0.2
1,859,805 - RS_RS08775 0.53 -0.3
1,859,805 - RS_RS08775 0.53 +0.4
1,859,818 - RS_RS08775 0.54 +0.1
1,859,835 + RS_RS08775 0.55 -0.2
1,859,922 + RS_RS08775 0.64 +0.0
1,859,922 + RS_RS08775 0.64 +0.9
1,859,952 + RS_RS08775 0.66 -0.9
1,859,994 + RS_RS08775 0.70 -0.5
1,859,995 - RS_RS08775 0.70 +0.2
1,860,038 + RS_RS08775 0.74 -0.7
1,860,038 + RS_RS08775 0.74 +0.4
1,860,038 + RS_RS08775 0.74 +0.7
1,860,042 + RS_RS08775 0.75 -1.7
1,860,042 + RS_RS08775 0.75 -0.1
1,860,042 + RS_RS08775 0.75 +0.2
1,860,043 - RS_RS08775 0.75 +0.6
1,860,043 - RS_RS08775 0.75 +0.9

Or see this region's nucleotide sequence