Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06355

Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06350 and RS_RS06355 overlap by 4 nucleotidesRS_RS06355 and RS_RS06360 are separated by 285 nucleotides RS_RS06350: RS_RS06350 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 1,346,482 to 1,347,579 _RS06350 RS_RS06355: RS_RS06355 - glycerophosphodiester phosphodiesterase, at 1,347,576 to 1,348,334 _RS06355 RS_RS06360: RS_RS06360 - 2-oxoglutarate dehydrogenase E1 component, at 1,348,620 to 1,351,481 _RS06360 Position (kb) 1347 1348 1349Strain fitness (log2 ratio) -1 0 1at 1347.046 kb on + strand, within RS_RS06350at 1347.046 kb on + strand, within RS_RS06350at 1347.046 kb on + strand, within RS_RS06350at 1347.145 kb on + strand, within RS_RS06350at 1347.146 kb on - strand, within RS_RS06350at 1347.430 kb on + strand, within RS_RS06350at 1347.430 kb on + strand, within RS_RS06350at 1347.431 kb on - strand, within RS_RS06350at 1348.233 kb on + strand, within RS_RS06355at 1348.233 kb on + strand, within RS_RS06355at 1348.369 kb on + strandat 1348.369 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,347,046 + RS_RS06350 0.51 +0.1
1,347,046 + RS_RS06350 0.51 +0.3
1,347,046 + RS_RS06350 0.51 +0.5
1,347,145 + RS_RS06350 0.60 +0.2
1,347,146 - RS_RS06350 0.60 -0.0
1,347,430 + RS_RS06350 0.86 -0.2
1,347,430 + RS_RS06350 0.86 +0.1
1,347,431 - RS_RS06350 0.86 +0.0
1,348,233 + RS_RS06355 0.87 -0.2
1,348,233 + RS_RS06355 0.87 -0.3
1,348,369 + +1.0
1,348,369 + +0.5

Or see this region's nucleotide sequence