Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35170

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS35165 and RR42_RS35170 are separated by 120 nucleotidesRR42_RS35170 and RR42_RS35175 are separated by 11 nucleotidesRR42_RS35175 and RR42_RS35180 are separated by 120 nucleotidesRR42_RS35180 and RR42_RS35185 are separated by 185 nucleotides RR42_RS35165: RR42_RS35165 - LysR family transcriptional regulator, at 3,343,237 to 3,344,118 _RS35165 RR42_RS35170: RR42_RS35170 - NAD synthetase, at 3,344,239 to 3,346,302 _RS35170 RR42_RS35175: RR42_RS35175 - hypothetical protein, at 3,346,314 to 3,346,583 _RS35175 RR42_RS35180: RR42_RS35180 - hypothetical protein, at 3,346,704 to 3,346,973 _RS35180 RR42_RS35185: RR42_RS35185 - hypothetical protein, at 3,347,159 to 3,347,473 _RS35185 Position (kb) 3344 3345 3346 3347Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3343.541 kb on + strand, within RR42_RS35165at 3343.600 kb on + strand, within RR42_RS35165at 3343.600 kb on + strand, within RR42_RS35165at 3343.601 kb on - strand, within RR42_RS35165at 3343.804 kb on + strand, within RR42_RS35165at 3343.892 kb on - strand, within RR42_RS35165at 3343.962 kb on + strand, within RR42_RS35165at 3344.023 kb on + strand, within RR42_RS35165at 3344.023 kb on + strand, within RR42_RS35165at 3344.023 kb on + strand, within RR42_RS35165at 3344.023 kb on + strand, within RR42_RS35165at 3344.024 kb on - strand, within RR42_RS35165at 3344.032 kb on + strandat 3344.033 kb on - strandat 3344.033 kb on - strandat 3344.033 kb on - strandat 3346.373 kb on - strand, within RR42_RS35175at 3346.375 kb on - strand, within RR42_RS35175at 3346.387 kb on + strand, within RR42_RS35175at 3346.388 kb on - strand, within RR42_RS35175at 3346.455 kb on + strand, within RR42_RS35175at 3346.455 kb on + strand, within RR42_RS35175at 3346.456 kb on - strand, within RR42_RS35175at 3346.456 kb on - strand, within RR42_RS35175at 3346.584 kb on + strandat 3346.584 kb on + strandat 3346.584 kb on + strandat 3346.585 kb on - strandat 3346.585 kb on - strandat 3346.614 kb on + strandat 3346.614 kb on + strandat 3346.918 kb on + strand, within RR42_RS35180at 3346.918 kb on + strand, within RR42_RS35180at 3346.918 kb on + strand, within RR42_RS35180at 3346.918 kb on + strand, within RR42_RS35180at 3346.918 kb on + strand, within RR42_RS35180at 3346.918 kb on + strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.919 kb on - strand, within RR42_RS35180at 3346.930 kb on + strand, within RR42_RS35180at 3346.930 kb on + strand, within RR42_RS35180at 3346.930 kb on + strand, within RR42_RS35180at 3346.931 kb on - strand, within RR42_RS35180at 3346.931 kb on - strand, within RR42_RS35180at 3346.931 kb on - strand, within RR42_RS35180at 3346.931 kb on - strand, within RR42_RS35180at 3347.122 kb on + strandat 3347.122 kb on + strandat 3347.123 kb on - strandat 3347.123 kb on - strandat 3347.164 kb on + strandat 3347.164 kb on + strandat 3347.164 kb on + strandat 3347.165 kb on - strandat 3347.165 kb on - strandat 3347.238 kb on - strand, within RR42_RS35185

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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3,343,541 + RR42_RS35165 0.34 -0.0
3,343,600 + RR42_RS35165 0.41 -1.0
3,343,600 + RR42_RS35165 0.41 -0.1
3,343,601 - RR42_RS35165 0.41 -2.1
3,343,804 + RR42_RS35165 0.64 +0.1
3,343,892 - RR42_RS35165 0.74 +0.3
3,343,962 + RR42_RS35165 0.82 -1.0
3,344,023 + RR42_RS35165 0.89 +0.4
3,344,023 + RR42_RS35165 0.89 +0.0
3,344,023 + RR42_RS35165 0.89 +0.2
3,344,023 + RR42_RS35165 0.89 -1.8
3,344,024 - RR42_RS35165 0.89 +0.1
3,344,032 + -0.4
3,344,033 - -0.1
3,344,033 - +0.0
3,344,033 - +0.1
3,346,373 - RR42_RS35175 0.22 -0.9
3,346,375 - RR42_RS35175 0.23 +1.0
3,346,387 + RR42_RS35175 0.27 +0.8
3,346,388 - RR42_RS35175 0.27 +0.0
3,346,455 + RR42_RS35175 0.52 +0.8
3,346,455 + RR42_RS35175 0.52 -0.4
3,346,456 - RR42_RS35175 0.53 -1.8
3,346,456 - RR42_RS35175 0.53 -0.8
3,346,584 + +0.6
3,346,584 + +0.0
3,346,584 + -0.3
3,346,585 - -0.5
3,346,585 - +0.0
3,346,614 + -0.5
3,346,614 + -0.6
3,346,918 + RR42_RS35180 0.79 -0.5
3,346,918 + RR42_RS35180 0.79 +0.3
3,346,918 + RR42_RS35180 0.79 +0.5
3,346,918 + RR42_RS35180 0.79 +0.8
3,346,918 + RR42_RS35180 0.79 +0.9
3,346,918 + RR42_RS35180 0.79 +0.0
3,346,919 - RR42_RS35180 0.80 -0.1
3,346,919 - RR42_RS35180 0.80 -0.4
3,346,919 - RR42_RS35180 0.80 +0.1
3,346,919 - RR42_RS35180 0.80 -3.8
3,346,919 - RR42_RS35180 0.80 +0.2
3,346,919 - RR42_RS35180 0.80 -0.6
3,346,919 - RR42_RS35180 0.80 +0.6
3,346,919 - RR42_RS35180 0.80 -1.6
3,346,919 - RR42_RS35180 0.80 +0.4
3,346,919 - RR42_RS35180 0.80 -0.6
3,346,919 - RR42_RS35180 0.80 +0.1
3,346,919 - RR42_RS35180 0.80 -0.2
3,346,919 - RR42_RS35180 0.80 -0.5
3,346,919 - RR42_RS35180 0.80 -0.3
3,346,919 - RR42_RS35180 0.80 +0.6
3,346,930 + RR42_RS35180 0.84 -0.5
3,346,930 + RR42_RS35180 0.84 -0.4
3,346,930 + RR42_RS35180 0.84 -1.3
3,346,931 - RR42_RS35180 0.84 +0.0
3,346,931 - RR42_RS35180 0.84 +0.0
3,346,931 - RR42_RS35180 0.84 -0.6
3,346,931 - RR42_RS35180 0.84 -0.0
3,347,122 + +0.4
3,347,122 + -2.0
3,347,123 - -0.2
3,347,123 - +0.0
3,347,164 + -0.5
3,347,164 + -0.6
3,347,164 + -0.6
3,347,165 - +0.3
3,347,165 - +1.5
3,347,238 - RR42_RS35185 0.25 +0.2

Or see this region's nucleotide sequence