Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32580 and RR42_RS32585 are separated by 391 nucleotides RR42_RS32585 and RR42_RS32590 overlap by 1 nucleotides RR42_RS32590 and RR42_RS32595 are separated by 3 nucleotides
RR42_RS32580: RR42_RS32580 - GntR family transcriptional regulator, at 2,705,601 to 2,706,383
_RS32580
RR42_RS32585: RR42_RS32585 - cytochrome C oxidase, at 2,706,775 to 2,707,140
_RS32585
RR42_RS32590: RR42_RS32590 - cytochrome o ubiquinol oxidase subunit III, at 2,707,140 to 2,707,790
_RS32590
RR42_RS32595: RR42_RS32595 - cytochrome o ubiquinol oxidase subunit I, at 2,707,794 to 2,709,770
_RS32595
Position (kb)
2706
2707
2708 Strain fitness (log2 ratio)
-1
0
1 at 2705.861 kb on + strand, within RR42_RS32580 at 2705.950 kb on + strand, within RR42_RS32580 at 2705.951 kb on - strand, within RR42_RS32580 at 2705.951 kb on - strand, within RR42_RS32580 at 2705.951 kb on - strand, within RR42_RS32580 at 2706.254 kb on + strand, within RR42_RS32580 at 2706.254 kb on + strand, within RR42_RS32580 at 2706.254 kb on + strand, within RR42_RS32580 at 2706.397 kb on + strand at 2706.398 kb on - strand at 2706.398 kb on - strand at 2706.760 kb on - strand at 2706.760 kb on - strand at 2706.769 kb on + strand at 2706.789 kb on + strand at 2707.052 kb on + strand, within RR42_RS32585 at 2707.053 kb on - strand, within RR42_RS32585 at 2707.131 kb on + strand at 2707.131 kb on + strand at 2707.132 kb on - strand at 2707.553 kb on - strand, within RR42_RS32590 at 2707.773 kb on + strand at 2707.774 kb on - strand at 2707.861 kb on + strand at 2707.861 kb on + strand at 2707.943 kb on + strand at 2707.991 kb on - strand at 2708.122 kb on + strand, within RR42_RS32595
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 2,705,861 + RR42_RS32580 0.33 +0.8 2,705,950 + RR42_RS32580 0.45 -0.6 2,705,951 - RR42_RS32580 0.45 +0.8 2,705,951 - RR42_RS32580 0.45 +0.4 2,705,951 - RR42_RS32580 0.45 +1.2 2,706,254 + RR42_RS32580 0.83 -0.5 2,706,254 + RR42_RS32580 0.83 -0.7 2,706,254 + RR42_RS32580 0.83 -0.4 2,706,397 + +0.7 2,706,398 - +0.2 2,706,398 - -0.6 2,706,760 - -0.4 2,706,760 - -0.6 2,706,769 + -0.5 2,706,789 + -0.0 2,707,052 + RR42_RS32585 0.76 -1.1 2,707,053 - RR42_RS32585 0.76 -0.4 2,707,131 + -1.1 2,707,131 + -0.8 2,707,132 - +1.3 2,707,553 - RR42_RS32590 0.63 -0.4 2,707,773 + +1.4 2,707,774 - -0.9 2,707,861 + -0.4 2,707,861 + -1.0 2,707,943 + +0.5 2,707,991 - +0.3 2,708,122 + RR42_RS32595 0.17 -1.1
Or see this region's nucleotide sequence