Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28150 and RR42_RS28155 are separated by 47 nucleotides RR42_RS28155 and RR42_RS28160 are separated by 79 nucleotides
RR42_RS28150: RR42_RS28150 - EmrB/QacA subfamily drug resistance transporter, at 1,672,622 to 1,674,016
_RS28150
RR42_RS28155: RR42_RS28155 - hypothetical protein, at 1,674,064 to 1,674,462
_RS28155
RR42_RS28160: RR42_RS28160 - carboxylesterase, at 1,674,542 to 1,675,228
_RS28160
Position (kb)
1674
1675 Strain fitness (log2 ratio)
-1
0
1
2 at 1673.160 kb on + strand, within RR42_RS28150 at 1673.169 kb on - strand, within RR42_RS28150 at 1673.169 kb on - strand, within RR42_RS28150 at 1673.169 kb on - strand, within RR42_RS28150 at 1673.339 kb on + strand, within RR42_RS28150 at 1673.339 kb on + strand, within RR42_RS28150 at 1673.339 kb on + strand, within RR42_RS28150 at 1673.340 kb on - strand, within RR42_RS28150 at 1673.498 kb on + strand, within RR42_RS28150 at 1673.628 kb on + strand, within RR42_RS28150 at 1673.628 kb on + strand, within RR42_RS28150 at 1673.629 kb on - strand, within RR42_RS28150 at 1673.629 kb on - strand, within RR42_RS28150 at 1673.898 kb on - strand at 1673.914 kb on + strand at 1674.003 kb on + strand at 1674.344 kb on + strand, within RR42_RS28155 at 1674.345 kb on - strand, within RR42_RS28155 at 1674.497 kb on + strand at 1674.630 kb on + strand, within RR42_RS28160 at 1674.630 kb on + strand, within RR42_RS28160 at 1674.630 kb on + strand, within RR42_RS28160 at 1674.631 kb on - strand, within RR42_RS28160 at 1674.795 kb on + strand, within RR42_RS28160 at 1674.795 kb on + strand, within RR42_RS28160 at 1674.795 kb on + strand, within RR42_RS28160 at 1674.795 kb on + strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.850 kb on + strand, within RR42_RS28160 at 1674.851 kb on - strand, within RR42_RS28160 at 1674.851 kb on - strand, within RR42_RS28160 at 1674.852 kb on + strand, within RR42_RS28160 at 1674.852 kb on + strand, within RR42_RS28160 at 1675.033 kb on - strand, within RR42_RS28160 at 1675.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 1,673,160 + RR42_RS28150 0.39 -0.6 1,673,169 - RR42_RS28150 0.39 +0.9 1,673,169 - RR42_RS28150 0.39 +1.5 1,673,169 - RR42_RS28150 0.39 -0.4 1,673,339 + RR42_RS28150 0.51 +1.9 1,673,339 + RR42_RS28150 0.51 -1.4 1,673,339 + RR42_RS28150 0.51 +0.5 1,673,340 - RR42_RS28150 0.51 -1.0 1,673,498 + RR42_RS28150 0.63 -0.3 1,673,628 + RR42_RS28150 0.72 -0.2 1,673,628 + RR42_RS28150 0.72 -1.3 1,673,629 - RR42_RS28150 0.72 +0.0 1,673,629 - RR42_RS28150 0.72 -0.5 1,673,898 - -1.3 1,673,914 + +0.3 1,674,003 + +0.4 1,674,344 + RR42_RS28155 0.70 -1.2 1,674,345 - RR42_RS28155 0.70 -0.6 1,674,497 + -0.1 1,674,630 + RR42_RS28160 0.13 +0.7 1,674,630 + RR42_RS28160 0.13 -0.3 1,674,630 + RR42_RS28160 0.13 -0.1 1,674,631 - RR42_RS28160 0.13 +0.0 1,674,795 + RR42_RS28160 0.37 -1.0 1,674,795 + RR42_RS28160 0.37 +0.1 1,674,795 + RR42_RS28160 0.37 +0.9 1,674,795 + RR42_RS28160 0.37 +0.3 1,674,796 - RR42_RS28160 0.37 -0.3 1,674,796 - RR42_RS28160 0.37 -1.0 1,674,796 - RR42_RS28160 0.37 -0.3 1,674,796 - RR42_RS28160 0.37 +0.8 1,674,796 - RR42_RS28160 0.37 +0.7 1,674,796 - RR42_RS28160 0.37 -1.4 1,674,796 - RR42_RS28160 0.37 -0.7 1,674,796 - RR42_RS28160 0.37 -1.3 1,674,850 + RR42_RS28160 0.45 -0.2 1,674,851 - RR42_RS28160 0.45 +2.4 1,674,851 - RR42_RS28160 0.45 -0.2 1,674,852 + RR42_RS28160 0.45 -1.1 1,674,852 + RR42_RS28160 0.45 +0.7 1,675,033 - RR42_RS28160 0.71 -0.2 1,675,361 - +0.4
Or see this region's nucleotide sequence