Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28155

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28150 and RR42_RS28155 are separated by 47 nucleotidesRR42_RS28155 and RR42_RS28160 are separated by 79 nucleotides RR42_RS28150: RR42_RS28150 - EmrB/QacA subfamily drug resistance transporter, at 1,672,622 to 1,674,016 _RS28150 RR42_RS28155: RR42_RS28155 - hypothetical protein, at 1,674,064 to 1,674,462 _RS28155 RR42_RS28160: RR42_RS28160 - carboxylesterase, at 1,674,542 to 1,675,228 _RS28160 Position (kb) 1674 1675Strain fitness (log2 ratio) -1 0 1 2at 1673.160 kb on + strand, within RR42_RS28150at 1673.169 kb on - strand, within RR42_RS28150at 1673.169 kb on - strand, within RR42_RS28150at 1673.169 kb on - strand, within RR42_RS28150at 1673.339 kb on + strand, within RR42_RS28150at 1673.339 kb on + strand, within RR42_RS28150at 1673.339 kb on + strand, within RR42_RS28150at 1673.340 kb on - strand, within RR42_RS28150at 1673.498 kb on + strand, within RR42_RS28150at 1673.628 kb on + strand, within RR42_RS28150at 1673.628 kb on + strand, within RR42_RS28150at 1673.629 kb on - strand, within RR42_RS28150at 1673.629 kb on - strand, within RR42_RS28150at 1673.898 kb on - strandat 1673.914 kb on + strandat 1674.003 kb on + strandat 1674.344 kb on + strand, within RR42_RS28155at 1674.345 kb on - strand, within RR42_RS28155at 1674.497 kb on + strandat 1674.630 kb on + strand, within RR42_RS28160at 1674.630 kb on + strand, within RR42_RS28160at 1674.630 kb on + strand, within RR42_RS28160at 1674.631 kb on - strand, within RR42_RS28160at 1674.795 kb on + strand, within RR42_RS28160at 1674.795 kb on + strand, within RR42_RS28160at 1674.795 kb on + strand, within RR42_RS28160at 1674.795 kb on + strand, within RR42_RS28160at 1674.796 kb on - strand, within RR42_RS28160at 1674.796 kb on - strand, within RR42_RS28160at 1674.796 kb on - strand, within RR42_RS28160at 1674.796 kb on - strand, within RR42_RS28160at 1674.796 kb on - strand, within RR42_RS28160at 1674.796 kb on - strand, within RR42_RS28160at 1674.796 kb on - strand, within RR42_RS28160at 1674.796 kb on - strand, within RR42_RS28160at 1674.850 kb on + strand, within RR42_RS28160at 1674.851 kb on - strand, within RR42_RS28160at 1674.851 kb on - strand, within RR42_RS28160at 1674.852 kb on + strand, within RR42_RS28160at 1674.852 kb on + strand, within RR42_RS28160at 1675.033 kb on - strand, within RR42_RS28160at 1675.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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1,673,160 + RR42_RS28150 0.39 -0.6
1,673,169 - RR42_RS28150 0.39 +0.9
1,673,169 - RR42_RS28150 0.39 +1.5
1,673,169 - RR42_RS28150 0.39 -0.4
1,673,339 + RR42_RS28150 0.51 +1.9
1,673,339 + RR42_RS28150 0.51 -1.4
1,673,339 + RR42_RS28150 0.51 +0.5
1,673,340 - RR42_RS28150 0.51 -1.0
1,673,498 + RR42_RS28150 0.63 -0.3
1,673,628 + RR42_RS28150 0.72 -0.2
1,673,628 + RR42_RS28150 0.72 -1.3
1,673,629 - RR42_RS28150 0.72 +0.0
1,673,629 - RR42_RS28150 0.72 -0.5
1,673,898 - -1.3
1,673,914 + +0.3
1,674,003 + +0.4
1,674,344 + RR42_RS28155 0.70 -1.2
1,674,345 - RR42_RS28155 0.70 -0.6
1,674,497 + -0.1
1,674,630 + RR42_RS28160 0.13 +0.7
1,674,630 + RR42_RS28160 0.13 -0.3
1,674,630 + RR42_RS28160 0.13 -0.1
1,674,631 - RR42_RS28160 0.13 +0.0
1,674,795 + RR42_RS28160 0.37 -1.0
1,674,795 + RR42_RS28160 0.37 +0.1
1,674,795 + RR42_RS28160 0.37 +0.9
1,674,795 + RR42_RS28160 0.37 +0.3
1,674,796 - RR42_RS28160 0.37 -0.3
1,674,796 - RR42_RS28160 0.37 -1.0
1,674,796 - RR42_RS28160 0.37 -0.3
1,674,796 - RR42_RS28160 0.37 +0.8
1,674,796 - RR42_RS28160 0.37 +0.7
1,674,796 - RR42_RS28160 0.37 -1.4
1,674,796 - RR42_RS28160 0.37 -0.7
1,674,796 - RR42_RS28160 0.37 -1.3
1,674,850 + RR42_RS28160 0.45 -0.2
1,674,851 - RR42_RS28160 0.45 +2.4
1,674,851 - RR42_RS28160 0.45 -0.2
1,674,852 + RR42_RS28160 0.45 -1.1
1,674,852 + RR42_RS28160 0.45 +0.7
1,675,033 - RR42_RS28160 0.71 -0.2
1,675,361 - +0.4

Or see this region's nucleotide sequence