Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27525 and RR42_RS27530 are separated by 160 nucleotides RR42_RS27530 and RR42_RS27535 are separated by 71 nucleotides
RR42_RS27525: RR42_RS27525 - hypothetical protein, at 1,541,097 to 1,541,666
_RS27525
RR42_RS27530: RR42_RS27530 - hypothetical protein, at 1,541,827 to 1,542,315
_RS27530
RR42_RS27535: RR42_RS27535 - membrane protein, at 1,542,387 to 1,544,159
_RS27535
Position (kb) 1541
1542
1543 Strain fitness (log2 ratio) -1
0
1 at 1541.184 kb on + strand, within RR42_RS27525 at 1541.266 kb on + strand, within RR42_RS27525 at 1541.266 kb on + strand, within RR42_RS27525 at 1541.266 kb on + strand, within RR42_RS27525 at 1541.267 kb on - strand, within RR42_RS27525 at 1541.267 kb on - strand, within RR42_RS27525 at 1541.393 kb on + strand, within RR42_RS27525 at 1541.399 kb on + strand, within RR42_RS27525 at 1541.399 kb on + strand, within RR42_RS27525 at 1541.400 kb on - strand, within RR42_RS27525 at 1541.420 kb on - strand, within RR42_RS27525 at 1541.420 kb on - strand, within RR42_RS27525 at 1541.420 kb on - strand, within RR42_RS27525 at 1541.420 kb on - strand, within RR42_RS27525 at 1541.448 kb on - strand, within RR42_RS27525 at 1541.571 kb on + strand, within RR42_RS27525 at 1541.572 kb on - strand, within RR42_RS27525 at 1541.572 kb on - strand, within RR42_RS27525 at 1541.572 kb on - strand, within RR42_RS27525 at 1541.572 kb on - strand, within RR42_RS27525 at 1541.572 kb on - strand, within RR42_RS27525 at 1541.786 kb on + strand at 1541.787 kb on - strand at 1541.788 kb on + strand at 1541.789 kb on - strand at 1541.797 kb on - strand at 1541.802 kb on + strand at 1541.803 kb on - strand at 1541.971 kb on + strand, within RR42_RS27530 at 1542.121 kb on + strand, within RR42_RS27530 at 1542.121 kb on + strand, within RR42_RS27530 at 1542.121 kb on + strand at 1542.122 kb on - strand, within RR42_RS27530 at 1542.205 kb on + strand, within RR42_RS27530 at 1542.294 kb on + strand at 1542.346 kb on + strand at 1542.347 kb on - strand at 1542.347 kb on - strand at 1542.376 kb on + strand at 1542.376 kb on + strand at 1542.377 kb on - strand at 1542.377 kb on - strand at 1542.377 kb on - strand at 1542.377 kb on - strand at 1542.377 kb on - strand at 1542.844 kb on - strand, within RR42_RS27535 at 1542.844 kb on - strand, within RR42_RS27535 at 1543.251 kb on + strand, within RR42_RS27535 at 1543.312 kb on - strand, within RR42_RS27535
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 1,541,184 + RR42_RS27525 0.15 +0.7 1,541,266 + RR42_RS27525 0.30 -0.5 1,541,266 + RR42_RS27525 0.30 +0.6 1,541,266 + RR42_RS27525 0.30 +0.3 1,541,267 - RR42_RS27525 0.30 +0.2 1,541,267 - RR42_RS27525 0.30 -0.0 1,541,393 + RR42_RS27525 0.52 +0.0 1,541,399 + RR42_RS27525 0.53 -0.2 1,541,399 + RR42_RS27525 0.53 -0.9 1,541,400 - RR42_RS27525 0.53 -0.2 1,541,420 - RR42_RS27525 0.57 +0.1 1,541,420 - RR42_RS27525 0.57 -0.1 1,541,420 - RR42_RS27525 0.57 +0.5 1,541,420 - RR42_RS27525 0.57 +0.2 1,541,448 - RR42_RS27525 0.62 +0.4 1,541,571 + RR42_RS27525 0.83 +0.0 1,541,572 - RR42_RS27525 0.83 +0.4 1,541,572 - RR42_RS27525 0.83 -0.3 1,541,572 - RR42_RS27525 0.83 -0.2 1,541,572 - RR42_RS27525 0.83 -0.3 1,541,572 - RR42_RS27525 0.83 +0.0 1,541,786 + +0.6 1,541,787 - -0.5 1,541,788 + -0.0 1,541,789 - -0.0 1,541,797 - +0.2 1,541,802 + -0.2 1,541,803 - +0.6 1,541,971 + RR42_RS27530 0.29 -1.5 1,542,121 + RR42_RS27530 0.60 -1.6 1,542,121 + RR42_RS27530 0.60 -0.4 1,542,121 + +0.1 1,542,122 - RR42_RS27530 0.60 -1.5 1,542,205 + RR42_RS27530 0.77 +0.1 1,542,294 + +0.7 1,542,346 + -0.2 1,542,347 - +0.1 1,542,347 - +0.4 1,542,376 + -0.6 1,542,376 + -0.5 1,542,377 - +0.4 1,542,377 - +0.8 1,542,377 - +0.2 1,542,377 - +1.0 1,542,377 - +0.5 1,542,844 - RR42_RS27535 0.26 -0.1 1,542,844 - RR42_RS27535 0.26 +0.2 1,543,251 + RR42_RS27535 0.49 +1.0 1,543,312 - RR42_RS27535 0.52 +0.7
Or see this region's nucleotide sequence