Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23300 and RR42_RS23305 are separated by 93 nucleotides RR42_RS23305 and RR42_RS23310 overlap by 4 nucleotides RR42_RS23310 and RR42_RS23315 overlap by 4 nucleotides
RR42_RS23300: RR42_RS23300 - hypothetical protein, at 557,895 to 558,860
_RS23300
RR42_RS23305: RR42_RS23305 - hypothetical protein, at 558,954 to 559,529
_RS23305
RR42_RS23310: RR42_RS23310 - cytochrome B6, at 559,526 to 560,863
_RS23310
RR42_RS23315: RR42_RS23315 - serine/threonine protein phosphatase, at 560,860 to 562,416
_RS23315
Position (kb) 559
560
561 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 558.572 kb on - strand, within RR42_RS23300 at 558.623 kb on + strand, within RR42_RS23300 at 558.788 kb on + strand at 558.789 kb on - strand at 558.793 kb on - strand at 558.920 kb on - strand at 558.920 kb on - strand at 559.317 kb on + strand, within RR42_RS23305 at 559.365 kb on + strand, within RR42_RS23305 at 559.566 kb on + strand at 559.567 kb on - strand at 559.567 kb on - strand at 559.761 kb on + strand, within RR42_RS23310 at 559.762 kb on - strand, within RR42_RS23310 at 559.762 kb on - strand, within RR42_RS23310 at 559.762 kb on - strand, within RR42_RS23310 at 560.127 kb on + strand, within RR42_RS23310 at 560.176 kb on - strand, within RR42_RS23310 at 560.406 kb on + strand, within RR42_RS23310 at 560.428 kb on - strand, within RR42_RS23310 at 560.428 kb on - strand, within RR42_RS23310 at 560.448 kb on + strand, within RR42_RS23310 at 560.449 kb on - strand, within RR42_RS23310 at 560.449 kb on - strand, within RR42_RS23310 at 560.457 kb on + strand, within RR42_RS23310 at 560.457 kb on + strand, within RR42_RS23310 at 560.457 kb on + strand, within RR42_RS23310 at 560.458 kb on - strand, within RR42_RS23310 at 560.899 kb on - strand at 560.944 kb on - strand at 560.945 kb on + strand at 560.945 kb on + strand at 560.945 kb on + strand at 561.085 kb on + strand, within RR42_RS23315 at 561.207 kb on - strand, within RR42_RS23315 at 561.356 kb on - strand, within RR42_RS23315 at 561.488 kb on + strand, within RR42_RS23315 at 561.489 kb on - strand, within RR42_RS23315 at 561.843 kb on - strand, within RR42_RS23315
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 558,572 - RR42_RS23300 0.70 -0.6 558,623 + RR42_RS23300 0.75 -0.4 558,788 + +0.9 558,789 - +0.1 558,793 - -0.3 558,920 - -0.1 558,920 - -0.4 559,317 + RR42_RS23305 0.63 +3.1 559,365 + RR42_RS23305 0.71 +0.2 559,566 + +0.3 559,567 - -1.3 559,567 - +0.0 559,761 + RR42_RS23310 0.18 -0.4 559,762 - RR42_RS23310 0.18 +0.1 559,762 - RR42_RS23310 0.18 +0.1 559,762 - RR42_RS23310 0.18 -0.2 560,127 + RR42_RS23310 0.45 -1.6 560,176 - RR42_RS23310 0.49 -0.3 560,406 + RR42_RS23310 0.66 -0.4 560,428 - RR42_RS23310 0.67 +0.1 560,428 - RR42_RS23310 0.67 -0.6 560,448 + RR42_RS23310 0.69 +0.0 560,449 - RR42_RS23310 0.69 +0.0 560,449 - RR42_RS23310 0.69 -0.2 560,457 + RR42_RS23310 0.70 -0.6 560,457 + RR42_RS23310 0.70 +0.7 560,457 + RR42_RS23310 0.70 -0.1 560,458 - RR42_RS23310 0.70 +0.9 560,899 - -0.6 560,944 - +0.7 560,945 + +0.0 560,945 + -0.6 560,945 + -0.2 561,085 + RR42_RS23315 0.14 +0.5 561,207 - RR42_RS23315 0.22 -2.0 561,356 - RR42_RS23315 0.32 +1.4 561,488 + RR42_RS23315 0.40 -0.5 561,489 - RR42_RS23315 0.40 +0.3 561,843 - RR42_RS23315 0.63 -1.0
Or see this region's nucleotide sequence