Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23195 and RR42_RS23200 are separated by 94 nucleotides RR42_RS23200 and RR42_RS23205 are separated by 91 nucleotides RR42_RS23205 and RR42_RS23210 are separated by 242 nucleotides RR42_RS23210 and RR42_RS23215 are separated by 17 nucleotides
RR42_RS23195: RR42_RS23195 - membrane protein, at 537,471 to 538,349
_RS23195
RR42_RS23200: RR42_RS23200 - aldehyde-activating protein, at 538,444 to 538,884
_RS23200
RR42_RS23205: RR42_RS23205 - hypothetical protein, at 538,976 to 539,365
_RS23205
RR42_RS23210: RR42_RS23210 - GntR family transcriptional regulator, at 539,608 to 540,285
_RS23210
RR42_RS23215: RR42_RS23215 - DSBA oxidoreductase, at 540,303 to 541,841
_RS23215
Position (kb) 538
539
540 Strain fitness (log2 ratio) -2
-1
0
1
2 at 538.112 kb on - strand, within RR42_RS23195 at 538.147 kb on - strand, within RR42_RS23195 at 538.159 kb on + strand, within RR42_RS23195 at 538.159 kb on + strand, within RR42_RS23195 at 538.159 kb on + strand, within RR42_RS23195 at 538.160 kb on - strand, within RR42_RS23195 at 538.163 kb on + strand, within RR42_RS23195 at 538.163 kb on + strand, within RR42_RS23195 at 538.163 kb on + strand, within RR42_RS23195 at 538.163 kb on + strand, within RR42_RS23195 at 538.163 kb on + strand, within RR42_RS23195 at 538.164 kb on - strand, within RR42_RS23195 at 538.197 kb on + strand, within RR42_RS23195 at 538.197 kb on + strand, within RR42_RS23195 at 538.197 kb on + strand, within RR42_RS23195 at 538.198 kb on - strand, within RR42_RS23195 at 538.298 kb on - strand at 538.348 kb on - strand at 538.398 kb on + strand at 538.398 kb on + strand at 538.422 kb on + strand at 538.487 kb on + strand at 538.487 kb on + strand at 538.488 kb on - strand, within RR42_RS23200 at 538.488 kb on - strand, within RR42_RS23200 at 538.529 kb on + strand, within RR42_RS23200 at 538.530 kb on - strand, within RR42_RS23200 at 538.694 kb on + strand, within RR42_RS23200 at 538.694 kb on + strand, within RR42_RS23200 at 538.694 kb on + strand, within RR42_RS23200 at 538.694 kb on + strand, within RR42_RS23200 at 538.695 kb on - strand, within RR42_RS23200 at 538.695 kb on - strand, within RR42_RS23200 at 538.695 kb on - strand, within RR42_RS23200 at 538.695 kb on - strand, within RR42_RS23200 at 538.775 kb on + strand, within RR42_RS23200 at 538.778 kb on - strand, within RR42_RS23200 at 538.870 kb on - strand at 538.884 kb on + strand at 538.885 kb on - strand at 538.891 kb on + strand at 538.891 kb on + strand at 538.891 kb on + strand at 538.933 kb on + strand at 538.933 kb on + strand at 538.934 kb on - strand at 538.934 kb on - strand at 538.934 kb on - strand at 538.934 kb on - strand at 538.934 kb on - strand at 538.934 kb on - strand at 538.978 kb on - strand at 539.055 kb on - strand, within RR42_RS23205 at 539.416 kb on + strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.418 kb on + strand at 539.418 kb on + strand at 539.418 kb on + strand at 539.418 kb on + strand at 539.418 kb on + strand at 539.419 kb on - strand at 539.419 kb on - strand at 539.419 kb on - strand at 539.485 kb on - strand at 539.525 kb on + strand at 539.525 kb on + strand at 539.526 kb on - strand at 539.526 kb on - strand at 539.599 kb on + strand at 539.599 kb on + strand at 539.599 kb on + strand at 539.599 kb on + strand at 539.600 kb on - strand at 539.960 kb on - strand, within RR42_RS23210 at 540.064 kb on + strand, within RR42_RS23210 at 540.064 kb on + strand, within RR42_RS23210 at 540.064 kb on + strand, within RR42_RS23210 at 540.065 kb on - strand, within RR42_RS23210
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 538,112 - RR42_RS23195 0.73 +0.2 538,147 - RR42_RS23195 0.77 +0.6 538,159 + RR42_RS23195 0.78 +0.2 538,159 + RR42_RS23195 0.78 +0.3 538,159 + RR42_RS23195 0.78 -0.5 538,160 - RR42_RS23195 0.78 -0.2 538,163 + RR42_RS23195 0.79 -0.6 538,163 + RR42_RS23195 0.79 +0.8 538,163 + RR42_RS23195 0.79 +0.1 538,163 + RR42_RS23195 0.79 +0.7 538,163 + RR42_RS23195 0.79 +0.9 538,164 - RR42_RS23195 0.79 -0.3 538,197 + RR42_RS23195 0.83 +0.4 538,197 + RR42_RS23195 0.83 -0.0 538,197 + RR42_RS23195 0.83 -0.3 538,198 - RR42_RS23195 0.83 -0.6 538,298 - -2.3 538,348 - +0.3 538,398 + -0.0 538,398 + +0.1 538,422 + +0.7 538,487 + +1.0 538,487 + +0.8 538,488 - RR42_RS23200 0.10 -0.1 538,488 - RR42_RS23200 0.10 +0.4 538,529 + RR42_RS23200 0.19 -0.1 538,530 - RR42_RS23200 0.20 +0.1 538,694 + RR42_RS23200 0.57 -1.0 538,694 + RR42_RS23200 0.57 -1.1 538,694 + RR42_RS23200 0.57 -0.3 538,694 + RR42_RS23200 0.57 +0.4 538,695 - RR42_RS23200 0.57 +2.3 538,695 - RR42_RS23200 0.57 -0.0 538,695 - RR42_RS23200 0.57 +0.1 538,695 - RR42_RS23200 0.57 -0.8 538,775 + RR42_RS23200 0.75 -1.8 538,778 - RR42_RS23200 0.76 -0.9 538,870 - -0.1 538,884 + -0.7 538,885 - +0.3 538,891 + -1.6 538,891 + -0.1 538,891 + +0.3 538,933 + +0.3 538,933 + +0.8 538,934 - +0.3 538,934 - -0.6 538,934 - -0.2 538,934 - +0.5 538,934 - +0.1 538,934 - +0.5 538,978 - -1.7 539,055 - RR42_RS23205 0.20 -1.3 539,416 + -0.3 539,417 - -0.1 539,417 - -0.2 539,417 - +1.0 539,418 + +1.0 539,418 + -0.1 539,418 + +1.2 539,418 + +1.6 539,418 + -0.3 539,419 - +0.9 539,419 - -0.2 539,419 - +0.1 539,485 - +0.3 539,525 + -0.1 539,525 + +1.4 539,526 - -0.2 539,526 - +2.2 539,599 + +0.5 539,599 + +0.3 539,599 + +0.0 539,599 + -0.7 539,600 - -0.1 539,960 - RR42_RS23210 0.52 +0.3 540,064 + RR42_RS23210 0.67 +0.5 540,064 + RR42_RS23210 0.67 -0.6 540,064 + RR42_RS23210 0.67 +0.6 540,065 - RR42_RS23210 0.67 +0.7
Or see this region's nucleotide sequence