Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22395 and RR42_RS22400 are separated by 112 nucleotides RR42_RS22400 and RR42_RS22405 are separated by 202 nucleotides RR42_RS22405 and RR42_RS22410 are separated by 178 nucleotides
RR42_RS22395: RR42_RS22395 - hypothetical protein, at 360,657 to 361,688
_RS22395
RR42_RS22400: RR42_RS22400 - FMN reductase, at 361,801 to 362,421
_RS22400
RR42_RS22405: RR42_RS22405 - hypothetical protein, at 362,624 to 362,929
_RS22405
RR42_RS22410: RR42_RS22410 - cell division protein ZipA, at 363,108 to 363,662
_RS22410
Position (kb) 361
362
363 Strain fitness (log2 ratio) -2
-1
0
1
2 at 360.818 kb on + strand, within RR42_RS22395 at 361.153 kb on + strand, within RR42_RS22395 at 361.529 kb on - strand, within RR42_RS22395 at 361.730 kb on - strand at 361.777 kb on - strand at 361.784 kb on + strand at 361.784 kb on + strand at 361.785 kb on - strand at 361.785 kb on - strand at 361.785 kb on - strand at 362.225 kb on + strand, within RR42_RS22400 at 362.225 kb on + strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.407 kb on - strand at 363.039 kb on - strand at 363.064 kb on - strand at 363.296 kb on - strand, within RR42_RS22410
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 360,818 + RR42_RS22395 0.16 -0.8 361,153 + RR42_RS22395 0.48 -0.5 361,529 - RR42_RS22395 0.84 +0.5 361,730 - +0.5 361,777 - +0.3 361,784 + +0.1 361,784 + -0.1 361,785 - +0.9 361,785 - -0.1 361,785 - -2.1 362,225 + RR42_RS22400 0.68 +1.1 362,225 + RR42_RS22400 0.68 +0.9 362,226 - RR42_RS22400 0.68 +0.3 362,226 - RR42_RS22400 0.68 +0.1 362,226 - RR42_RS22400 0.68 +0.7 362,226 - RR42_RS22400 0.68 +2.1 362,226 - RR42_RS22400 0.68 +0.3 362,226 - RR42_RS22400 0.68 -1.1 362,407 - -0.9 363,039 - -2.2 363,064 - +0.1 363,296 - RR42_RS22410 0.34 -0.4
Or see this region's nucleotide sequence