Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21835 and RR42_RS21840 are separated by 37 nucleotides RR42_RS21840 and RR42_RS21845 are separated by 109 nucleotides
RR42_RS21835: RR42_RS21835 - muconate cycloisomerase, at 226,996 to 228,117
_RS21835
RR42_RS21840: RR42_RS21840 - muconolactone delta-isomerase, at 228,155 to 228,433
_RS21840
RR42_RS21845: RR42_RS21845 - LacI family transcriptional regulator, at 228,543 to 229,529
_RS21845
Position (kb) 228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 227.167 kb on + strand, within RR42_RS21835 at 227.167 kb on + strand, within RR42_RS21835 at 227.167 kb on + strand, within RR42_RS21835 at 227.209 kb on - strand, within RR42_RS21835 at 227.212 kb on + strand, within RR42_RS21835 at 227.213 kb on - strand, within RR42_RS21835 at 227.213 kb on - strand, within RR42_RS21835 at 228.025 kb on + strand at 228.180 kb on + strand at 228.180 kb on + strand at 228.180 kb on + strand at 228.180 kb on + strand at 228.180 kb on + strand at 228.180 kb on + strand at 228.181 kb on - strand at 228.181 kb on - strand at 228.181 kb on - strand at 228.302 kb on + strand, within RR42_RS21840 at 228.302 kb on + strand, within RR42_RS21840 at 228.302 kb on + strand, within RR42_RS21840 at 228.311 kb on + strand, within RR42_RS21840 at 228.311 kb on + strand, within RR42_RS21840 at 228.312 kb on - strand, within RR42_RS21840 at 228.312 kb on - strand, within RR42_RS21840 at 228.312 kb on - strand, within RR42_RS21840 at 228.380 kb on + strand, within RR42_RS21840 at 228.380 kb on + strand, within RR42_RS21840 at 228.381 kb on - strand, within RR42_RS21840 at 228.432 kb on - strand at 228.554 kb on - strand at 228.633 kb on + strand at 228.633 kb on + strand at 228.634 kb on - strand at 228.880 kb on - strand, within RR42_RS21845 at 228.930 kb on - strand, within RR42_RS21845 at 229.014 kb on + strand, within RR42_RS21845 at 229.014 kb on + strand, within RR42_RS21845 at 229.014 kb on + strand, within RR42_RS21845 at 229.014 kb on + strand, within RR42_RS21845 at 229.015 kb on - strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.108 kb on - strand, within RR42_RS21845 at 229.158 kb on + strand, within RR42_RS21845 at 229.158 kb on + strand, within RR42_RS21845 at 229.158 kb on + strand, within RR42_RS21845 at 229.159 kb on - strand, within RR42_RS21845 at 229.159 kb on - strand, within RR42_RS21845 at 229.159 kb on - strand, within RR42_RS21845 at 229.159 kb on - strand, within RR42_RS21845 at 229.160 kb on + strand, within RR42_RS21845 at 229.160 kb on + strand, within RR42_RS21845 at 229.160 kb on + strand, within RR42_RS21845 at 229.160 kb on + strand, within RR42_RS21845 at 229.161 kb on - strand, within RR42_RS21845 at 229.161 kb on - strand, within RR42_RS21845 at 229.161 kb on - strand, within RR42_RS21845 at 229.161 kb on - strand, within RR42_RS21845 at 229.293 kb on + strand, within RR42_RS21845 at 229.293 kb on + strand, within RR42_RS21845 at 229.293 kb on + strand, within RR42_RS21845
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 227,167 + RR42_RS21835 0.15 -0.2 227,167 + RR42_RS21835 0.15 -1.4 227,167 + RR42_RS21835 0.15 -0.2 227,209 - RR42_RS21835 0.19 -0.0 227,212 + RR42_RS21835 0.19 -0.3 227,213 - RR42_RS21835 0.19 +0.4 227,213 - RR42_RS21835 0.19 +0.8 228,025 + +0.7 228,180 + +0.4 228,180 + -0.4 228,180 + +0.1 228,180 + +0.0 228,180 + +0.3 228,180 + -0.1 228,181 - -0.6 228,181 - -0.1 228,181 - -0.2 228,302 + RR42_RS21840 0.53 +0.2 228,302 + RR42_RS21840 0.53 -0.2 228,302 + RR42_RS21840 0.53 +0.2 228,311 + RR42_RS21840 0.56 -1.9 228,311 + RR42_RS21840 0.56 -0.0 228,312 - RR42_RS21840 0.56 -0.0 228,312 - RR42_RS21840 0.56 -0.7 228,312 - RR42_RS21840 0.56 -1.3 228,380 + RR42_RS21840 0.81 -0.4 228,380 + RR42_RS21840 0.81 -1.1 228,381 - RR42_RS21840 0.81 -0.4 228,432 - -0.9 228,554 - -0.1 228,633 + -0.2 228,633 + +0.0 228,634 - -0.4 228,880 - RR42_RS21845 0.34 -0.0 228,930 - RR42_RS21845 0.39 +0.7 229,014 + RR42_RS21845 0.48 +1.7 229,014 + RR42_RS21845 0.48 -0.7 229,014 + RR42_RS21845 0.48 -0.9 229,014 + RR42_RS21845 0.48 -0.5 229,015 - RR42_RS21845 0.48 +0.1 229,020 + RR42_RS21845 0.48 -0.5 229,020 + RR42_RS21845 0.48 +0.1 229,020 + RR42_RS21845 0.48 +0.1 229,020 + RR42_RS21845 0.48 +1.4 229,020 + RR42_RS21845 0.48 -0.0 229,020 + RR42_RS21845 0.48 +0.3 229,021 - RR42_RS21845 0.48 -0.5 229,021 - RR42_RS21845 0.48 -0.2 229,021 - RR42_RS21845 0.48 +0.3 229,021 - RR42_RS21845 0.48 -2.8 229,021 - RR42_RS21845 0.48 -2.3 229,021 - RR42_RS21845 0.48 +0.1 229,108 - RR42_RS21845 0.57 -0.9 229,158 + RR42_RS21845 0.62 +0.1 229,158 + RR42_RS21845 0.62 +0.7 229,158 + RR42_RS21845 0.62 -0.3 229,159 - RR42_RS21845 0.62 +0.3 229,159 - RR42_RS21845 0.62 +0.3 229,159 - RR42_RS21845 0.62 -0.5 229,159 - RR42_RS21845 0.62 -0.4 229,160 + RR42_RS21845 0.63 +0.4 229,160 + RR42_RS21845 0.63 +0.1 229,160 + RR42_RS21845 0.63 +0.2 229,160 + RR42_RS21845 0.63 -0.5 229,161 - RR42_RS21845 0.63 -0.3 229,161 - RR42_RS21845 0.63 +0.4 229,161 - RR42_RS21845 0.63 -0.5 229,161 - RR42_RS21845 0.63 -0.3 229,293 + RR42_RS21845 0.76 +0.3 229,293 + RR42_RS21845 0.76 -0.0 229,293 + RR42_RS21845 0.76 -1.3
Or see this region's nucleotide sequence