Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18990

Experiment: L-Tryptophan (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Tryptophan (N)
4,108,932	+		RR42_RS18985	0.53	-3.8
4,108,932	+		RR42_RS18985	0.53	-1.3
4,108,932	+		RR42_RS18985	0.53	-2.5
4,108,932	+		RR42_RS18985	0.53	-0.2
4,108,933	-		RR42_RS18985	0.53	-3.3
4,108,933	-		RR42_RS18985	0.53	-3.3
4,108,933	-		RR42_RS18985	0.53	-5.0
4,109,064	+		RR42_RS18985	0.62	-1.4
4,109,065	-		RR42_RS18985	0.62	-4.5
4,109,400	+		RR42_RS18985	0.85	-0.3
4,109,401	-		RR42_RS18985	0.85	-2.3
4,109,401	-		RR42_RS18985	0.85	-3.2
4,109,536	-				-0.6
4,109,536	-				-3.5
4,109,536	-				-2.1
4,109,566	-				-3.0
4,109,566	-				-2.5
4,109,676	+				-4.0
4,109,676	+				-2.6
4,109,800	+				-5.1
4,109,800	+				-6.0
4,109,800	+				-5.7
4,109,800	+				-3.3
4,109,801	-				+0.1
4,109,801	-				-0.9
4,109,801	-				-0.3
4,109,801	-				+0.1
4,109,825	-				-0.5
4,109,825	-				-0.1
4,110,086	-				-2.3
4,110,086	-				-3.8
4,110,086	-				-2.5
4,110,086	-				-3.6
4,110,086	-				-4.6
4,110,091	+				-3.3
4,110,091	+				-1.4
4,110,091	+				-3.6
4,110,091	+				-4.7
4,110,092	-				-1.8
4,110,092	-				-4.6
4,110,092	-				-1.1
4,110,092	-				-4.4
4,110,092	-				-2.8
4,110,167	+				-2.3
4,110,167	+				-4.6
4,110,167	+				-1.1
4,110,169	+				-1.1
4,110,169	+				-3.3
4,110,169	+				+0.3
4,110,170	-				-4.9
4,110,170	-				-2.1
4,110,284	-		RR42_RS18990	0.11	-0.3
4,110,385	+		RR42_RS18990	0.13	-3.8
4,110,386	-		RR42_RS18990	0.13	+0.8
4,110,386	-		RR42_RS18990	0.13	-0.6
4,110,386	-		RR42_RS18990	0.13	-3.9
4,110,402	+		RR42_RS18990	0.14	-1.3
4,110,403	-		RR42_RS18990	0.14	-3.4
4,110,403	-		RR42_RS18990	0.14	-1.1
4,110,508	+		RR42_RS18990	0.16	-2.6
4,110,564	-		RR42_RS18990	0.17	-1.3
4,110,721	+		RR42_RS18990	0.20	-3.3
4,110,721	+		RR42_RS18990	0.20	-3.9
4,110,722	-		RR42_RS18990	0.20	-1.9
4,111,301	+		RR42_RS18990	0.32	-3.8
4,111,302	-		RR42_RS18990	0.32	-2.7
4,111,364	-		RR42_RS18990	0.34	-4.5
4,111,364	-		RR42_RS18990	0.34	-1.3
4,111,364	-		RR42_RS18990	0.34	-2.9
4,111,364	-		RR42_RS18990	0.34	-3.6
4,111,364	-		RR42_RS18990	0.34	-5.8
4,111,415	-		RR42_RS18990	0.35	-2.8
4,111,432	+		RR42_RS18990	0.35	-2.7
4,111,432	+		RR42_RS18990	0.35	-4.2
4,111,432	+		RR42_RS18990	0.35	-2.1
4,111,433	-		RR42_RS18990	0.35	+0.8
4,111,525	+		RR42_RS18990	0.37	-1.3
4,111,526	-		RR42_RS18990	0.37	-3.9
4,111,939	+		RR42_RS18990	0.46	+1.2
4,111,939	+		RR42_RS18990	0.46	-5.0
4,111,939	+		RR42_RS18990	0.46	-3.0
4,111,948	+		RR42_RS18990	0.46	-2.8
4,111,948	+		RR42_RS18990	0.46	-2.8
4,111,948	+		RR42_RS18990	0.46	-4.4
4,111,948	+		RR42_RS18990	0.46	-2.3
4,111,948	+		RR42_RS18990	0.46	-3.7
4,111,949	-		RR42_RS18990	0.46	-1.6
4,111,949	-		RR42_RS18990	0.46	-3.3
4,111,949	-		RR42_RS18990	0.46	-3.2
4,111,949	-		RR42_RS18990	0.46	-5.5
4,111,949	-		RR42_RS18990	0.46	-2.3
4,111,949	-		RR42_RS18990	0.46	-3.3
4,111,949	-		RR42_RS18990	0.46	-1.9
4,111,949	-		RR42_RS18990	0.46	-3.2
4,111,949	-		RR42_RS18990	0.46	-3.6
4,112,024	+		RR42_RS18990	0.48	-0.3
4,112,024	+		RR42_RS18990	0.48	-1.4
4,112,024	+		RR42_RS18990	0.48	-6.0
4,112,024	+		RR42_RS18990	0.48	-0.3
4,112,024	+		RR42_RS18990	0.48	-2.1
4,112,024	+		RR42_RS18990	0.48	-4.0
4,112,024	+		RR42_RS18990	0.48	+1.2
4,112,024	+		RR42_RS18990	0.48	-2.1
4,112,024	+		RR42_RS18990	0.48	-1.8
4,112,025	-		RR42_RS18990	0.48	-4.2
4,112,025	-		RR42_RS18990	0.48	-1.3
4,112,025	-		RR42_RS18990	0.48	-2.8
4,112,047	+		RR42_RS18990	0.48	-2.1
4,112,053	+		RR42_RS18990	0.48	-1.1
4,112,053	+		RR42_RS18990	0.48	-3.2
4,112,054	-		RR42_RS18990	0.48	-2.6
4,112,185	+		RR42_RS18990	0.51	-3.9
4,112,186	-		RR42_RS18990	0.51	-2.6
4,112,242	+		RR42_RS18990	0.52	-3.7
4,112,242	+		RR42_RS18990	0.52	-4.4
4,112,251	+		RR42_RS18990	0.52	-0.8
4,112,251	+		RR42_RS18990	0.52	-4.8
4,112,251	+		RR42_RS18990	0.52	-3.8
4,112,252	-		RR42_RS18990	0.52	-3.8
4,112,252	-		RR42_RS18990	0.52	-2.2
4,112,252	-		RR42_RS18990	0.52	-2.3
4,112,389	+		RR42_RS18990	0.55	-3.1
4,112,470	-		RR42_RS18990	0.57	+1.1
4,112,483	+		RR42_RS18990	0.57	-1.3
4,112,483	+		RR42_RS18990	0.57	-1.3
4,112,593	+		RR42_RS18990	0.59	-2.1
4,112,677	+		RR42_RS18990	0.61	-3.2
4,112,678	-		RR42_RS18990	0.61	-2.8
4,112,684	+		RR42_RS18990	0.61	-1.9
4,112,684	+		RR42_RS18990	0.61	-3.8
4,112,685	-		RR42_RS18990	0.61	-2.2
4,112,685	-		RR42_RS18990	0.61	+0.2
4,112,696	-		RR42_RS18990	0.62	-1.8
4,112,696	-		RR42_RS18990	0.62	-4.3
4,112,696	-		RR42_RS18990	0.62	-1.3
4,112,696	-		RR42_RS18990	0.62	-1.3
4,112,719	+		RR42_RS18990	0.62	-3.9
4,112,720	-		RR42_RS18990	0.62	+0.2
4,112,730	-		RR42_RS18990	0.62	-4.9
4,112,730	-		RR42_RS18990	0.62	-1.1
4,112,730	-		RR42_RS18990	0.62	-0.3
4,112,733	-		RR42_RS18990	0.62	-0.8
4,112,920	+		RR42_RS18990	0.66	-1.2
4,112,926	+		RR42_RS18990	0.66	-4.4
4,112,926	+		RR42_RS18990	0.66	-4.6
4,112,926	+		RR42_RS18990	0.66	-3.2
4,112,927	-		RR42_RS18990	0.66	-2.3
4,112,927	-		RR42_RS18990	0.66	-4.6
4,112,927	-		RR42_RS18990	0.66	-2.9
4,112,927	-		RR42_RS18990	0.66	-1.3
4,112,927	-		RR42_RS18990	0.66	-3.4
4,113,046	+		RR42_RS18990	0.69	-3.3
4,113,047	-		RR42_RS18990	0.69	-5.5
4,113,166	+		RR42_RS18990	0.71	-6.1
4,113,166	+		RR42_RS18990	0.71	-4.0
4,113,167	-		RR42_RS18990	0.71	-4.4
4,113,346	+		RR42_RS18990	0.75	-0.8
4,113,346	+		RR42_RS18990	0.75	-2.7
4,113,457	+		RR42_RS18990	0.78	-2.4
4,113,457	+		RR42_RS18990	0.78	-4.2
4,113,458	-		RR42_RS18990	0.78	-3.4
4,113,458	-		RR42_RS18990	0.78	-0.3
4,113,463	+		RR42_RS18990	0.78	-4.1
4,113,464	-		RR42_RS18990	0.78	-2.3
4,113,464	-		RR42_RS18990	0.78	-1.9
4,113,610	+		RR42_RS18990	0.81	-2.1
4,113,610	+		RR42_RS18990	0.81	-3.8
4,113,610	+		RR42_RS18990	0.81	-3.3
4,113,839	-		RR42_RS18990	0.86	-1.6
4,113,839	-		RR42_RS18990	0.86	-1.5
4,113,839	-		RR42_RS18990	0.86	-2.1
4,113,839	-				-0.3
4,113,839	-		RR42_RS18990	0.86	-3.4
4,113,841	+		RR42_RS18990	0.86	-3.0
4,113,842	-		RR42_RS18990	0.86	-4.0
4,113,877	+		RR42_RS18990	0.86	-1.3
4,113,877	+		RR42_RS18990	0.86	-1.1
4,113,878	-		RR42_RS18990	0.86	-2.5
4,113,878	-		RR42_RS18990	0.86	-4.1
4,113,878	-		RR42_RS18990	0.86	-3.2
4,113,878	-		RR42_RS18990	0.86	-1.3
4,113,878	-		RR42_RS18990	0.86	-2.2
4,113,913	+		RR42_RS18990	0.87	-2.5
4,113,913	+		RR42_RS18990	0.87	+0.7
4,113,913	+		RR42_RS18990	0.87	-2.2
4,113,914	-		RR42_RS18990	0.87	-1.9
4,113,976	+		RR42_RS18990	0.88	-3.3
4,113,976	+		RR42_RS18990	0.88	-4.0
4,113,977	-		RR42_RS18990	0.88	-3.5
4,113,977	-		RR42_RS18990	0.88	-5.1
4,113,977	-		RR42_RS18990	0.88	-5.7
4,113,983	+		RR42_RS18990	0.89	-4.7
4,113,983	+		RR42_RS18990	0.89	-5.4
4,113,983	+		RR42_RS18990	0.89	-3.6
4,114,213	+				-3.8
4,114,213	+				-5.0
4,114,214	-				-4.3
4,114,214	-				-4.3
4,114,264	+				-1.9
4,114,265	-				-1.8
4,114,403	+				-3.6
4,114,403	+				-3.6
4,114,403	+				-4.9
4,114,403	+				+1.2
4,114,403	+				-4.4
4,114,404	-				-3.8
4,114,404	-				-4.0
4,114,453	+				-0.8
4,114,453	+				-0.1
4,114,453	+				-0.8
4,114,453	+				-4.4
4,114,453	+				-4.0
4,114,454	-				-0.3
4,114,454	-				-3.9
4,114,454	-				-1.9
4,114,454	-				-3.8
4,114,732	-				-5.6
4,114,732	-				-2.3
4,114,733	+				-1.8
4,114,734	-				-1.3
4,114,734	-				-0.4
4,114,734	-				-0.2
4,114,829	+				-0.2
4,114,867	+				+0.4
4,114,867	+				+0.1
4,114,868	-				+1.2
4,114,868	-				-0.3
4,114,886	-				-0.2
4,114,909	+				-0.2
4,114,909	+				-0.0
4,114,910	-				+0.2
4,115,110	+		RR42_RS18995	0.28	-0.3
4,115,110	+		RR42_RS18995	0.28	-0.8
4,115,135	+		RR42_RS18995	0.31	-1.8
4,115,136	-		RR42_RS18995	0.32	+0.2
4,115,272	+		RR42_RS18995	0.50	-1.3
4,115,272	+		RR42_RS18995	0.50	-0.4
4,115,272	+		RR42_RS18995	0.50	-0.3
4,115,272	+		RR42_RS18995	0.50	-1.3
4,115,272	+		RR42_RS18995	0.50	-1.0
4,115,273	-		RR42_RS18995	0.50	-0.3
4,115,273	-		RR42_RS18995	0.50	+0.2
4,115,273	-		RR42_RS18995	0.50	-0.4
4,115,372	-		RR42_RS18995	0.64	-1.4
4,115,470	+		RR42_RS18995	0.78	-0.9
4,115,470	+		RR42_RS18995	0.78	+0.2
4,115,470	+		RR42_RS18995	0.78	-0.0
4,115,470	+		RR42_RS18995	0.78	-0.9
4,115,471	-		RR42_RS18995	0.78	+0.9
4,115,471	-		RR42_RS18995	0.78	+0.9
4,115,525	-		RR42_RS18995	0.85	-0.2
4,115,525	-		RR42_RS18995	0.85	-0.3
4,115,525	-		RR42_RS18995	0.85	-0.4