Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17015

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17010 and RR42_RS17015 are separated by 71 nucleotidesRR42_RS17015 and RR42_RS17020 are separated by 32 nucleotides RR42_RS17010: RR42_RS17010 - L-aspartate oxidase, at 3,680,104 to 3,681,702 _RS17010 RR42_RS17015: RR42_RS17015 - nicotinate-nucleotide pyrophosphorylase, at 3,681,774 to 3,682,643 _RS17015 RR42_RS17020: RR42_RS17020 - quinolinate synthetase, at 3,682,676 to 3,683,827 _RS17020 Position (kb) 3681 3682 3683Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3680.822 kb on - strand, within RR42_RS17010at 3680.822 kb on - strand, within RR42_RS17010at 3680.822 kb on - strand, within RR42_RS17010at 3680.861 kb on + strand, within RR42_RS17010at 3681.080 kb on + strand, within RR42_RS17010at 3681.080 kb on + strand, within RR42_RS17010at 3681.081 kb on - strand, within RR42_RS17010at 3681.130 kb on + strand, within RR42_RS17010at 3681.130 kb on + strand, within RR42_RS17010at 3681.130 kb on + strand, within RR42_RS17010at 3681.131 kb on - strand, within RR42_RS17010at 3681.131 kb on - strand, within RR42_RS17010at 3681.131 kb on - strand, within RR42_RS17010at 3681.131 kb on - strand, within RR42_RS17010at 3681.132 kb on + strand, within RR42_RS17010at 3681.132 kb on + strand, within RR42_RS17010at 3681.132 kb on + strand, within RR42_RS17010at 3681.132 kb on + strand, within RR42_RS17010at 3681.132 kb on + strand, within RR42_RS17010at 3681.133 kb on - strand, within RR42_RS17010at 3681.133 kb on - strand, within RR42_RS17010at 3681.133 kb on - strand, within RR42_RS17010at 3681.188 kb on - strand, within RR42_RS17010at 3681.424 kb on + strand, within RR42_RS17010at 3681.424 kb on + strand, within RR42_RS17010at 3681.425 kb on - strand, within RR42_RS17010at 3681.505 kb on + strand, within RR42_RS17010at 3681.505 kb on + strand, within RR42_RS17010at 3681.506 kb on - strand, within RR42_RS17010at 3681.508 kb on + strand, within RR42_RS17010at 3681.508 kb on + strand, within RR42_RS17010at 3681.509 kb on - strand, within RR42_RS17010at 3681.509 kb on - strand, within RR42_RS17010at 3681.549 kb on + strandat 3681.582 kb on + strandat 3681.589 kb on + strandat 3681.701 kb on - strandat 3681.749 kb on - strandat 3681.776 kb on - strandat 3681.797 kb on - strandat 3681.797 kb on - strandat 3682.177 kb on + strand, within RR42_RS17015at 3682.177 kb on + strand, within RR42_RS17015at 3682.178 kb on - strand, within RR42_RS17015at 3682.178 kb on - strand, within RR42_RS17015at 3682.178 kb on - strand, within RR42_RS17015at 3682.609 kb on + strandat 3682.609 kb on + strandat 3682.610 kb on - strandat 3682.655 kb on + strandat 3682.828 kb on + strand, within RR42_RS17020at 3682.829 kb on - strand, within RR42_RS17020at 3683.028 kb on - strand, within RR42_RS17020at 3683.028 kb on - strand, within RR42_RS17020at 3683.225 kb on - strand, within RR42_RS17020at 3683.226 kb on + strand, within RR42_RS17020at 3683.362 kb on - strand, within RR42_RS17020at 3683.362 kb on - strand, within RR42_RS17020at 3683.362 kb on - strand, within RR42_RS17020at 3683.362 kb on - strand, within RR42_RS17020at 3683.631 kb on + strand, within RR42_RS17020at 3683.631 kb on + strand, within RR42_RS17020at 3683.632 kb on - strand, within RR42_RS17020at 3683.632 kb on - strand, within RR42_RS17020at 3683.632 kb on - strand, within RR42_RS17020at 3683.635 kb on - strand, within RR42_RS17020at 3683.635 kb on - strand, within RR42_RS17020at 3683.635 kb on - strand, within RR42_RS17020

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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3,680,822 - RR42_RS17010 0.45 -0.2
3,680,822 - RR42_RS17010 0.45 -0.5
3,680,822 - RR42_RS17010 0.45 -1.5
3,680,861 + RR42_RS17010 0.47 +0.6
3,681,080 + RR42_RS17010 0.61 -0.6
3,681,080 + RR42_RS17010 0.61 +0.5
3,681,081 - RR42_RS17010 0.61 +0.3
3,681,130 + RR42_RS17010 0.64 +0.5
3,681,130 + RR42_RS17010 0.64 +0.1
3,681,130 + RR42_RS17010 0.64 +0.9
3,681,131 - RR42_RS17010 0.64 +1.3
3,681,131 - RR42_RS17010 0.64 -0.2
3,681,131 - RR42_RS17010 0.64 +0.0
3,681,131 - RR42_RS17010 0.64 -0.3
3,681,132 + RR42_RS17010 0.64 -0.1
3,681,132 + RR42_RS17010 0.64 -0.9
3,681,132 + RR42_RS17010 0.64 -0.5
3,681,132 + RR42_RS17010 0.64 -0.1
3,681,132 + RR42_RS17010 0.64 -0.0
3,681,133 - RR42_RS17010 0.64 +0.3
3,681,133 - RR42_RS17010 0.64 +0.4
3,681,133 - RR42_RS17010 0.64 -0.3
3,681,188 - RR42_RS17010 0.68 +0.0
3,681,424 + RR42_RS17010 0.83 -0.0
3,681,424 + RR42_RS17010 0.83 +0.3
3,681,425 - RR42_RS17010 0.83 -0.3
3,681,505 + RR42_RS17010 0.88 -1.6
3,681,505 + RR42_RS17010 0.88 -0.1
3,681,506 - RR42_RS17010 0.88 -0.5
3,681,508 + RR42_RS17010 0.88 +1.3
3,681,508 + RR42_RS17010 0.88 -0.9
3,681,509 - RR42_RS17010 0.88 +0.6
3,681,509 - RR42_RS17010 0.88 -3.0
3,681,549 + -1.2
3,681,582 + +0.4
3,681,589 + -0.2
3,681,701 - +0.0
3,681,749 - +0.2
3,681,776 - +0.6
3,681,797 - -1.7
3,681,797 - +0.6
3,682,177 + RR42_RS17015 0.46 -0.0
3,682,177 + RR42_RS17015 0.46 +0.3
3,682,178 - RR42_RS17015 0.46 -0.2
3,682,178 - RR42_RS17015 0.46 +0.2
3,682,178 - RR42_RS17015 0.46 +1.1
3,682,609 + +0.0
3,682,609 + -1.2
3,682,610 - +0.2
3,682,655 + +0.3
3,682,828 + RR42_RS17020 0.13 -0.1
3,682,829 - RR42_RS17020 0.13 -1.7
3,683,028 - RR42_RS17020 0.31 +0.0
3,683,028 - RR42_RS17020 0.31 -0.1
3,683,225 - RR42_RS17020 0.48 +0.7
3,683,226 + RR42_RS17020 0.48 +0.1
3,683,362 - RR42_RS17020 0.60 -1.2
3,683,362 - RR42_RS17020 0.60 -0.4
3,683,362 - RR42_RS17020 0.60 -0.6
3,683,362 - RR42_RS17020 0.60 -0.0
3,683,631 + RR42_RS17020 0.83 -0.2
3,683,631 + RR42_RS17020 0.83 +0.2
3,683,632 - RR42_RS17020 0.83 -0.5
3,683,632 - RR42_RS17020 0.83 +1.2
3,683,632 - RR42_RS17020 0.83 +0.3
3,683,635 - RR42_RS17020 0.83 +2.1
3,683,635 - RR42_RS17020 0.83 +0.4
3,683,635 - RR42_RS17020 0.83 +0.0

Or see this region's nucleotide sequence