Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15365 and RR42_RS15370 are separated by 16 nucleotides RR42_RS15370 and RR42_RS15375 are separated by 13 nucleotides RR42_RS15375 and RR42_RS15380 are separated by 162 nucleotides RR42_RS15380 and RR42_RS15385 are separated by 53 nucleotides
RR42_RS15365: RR42_RS15365 - flavin reductase, at 3,323,929 to 3,324,483
_RS15365
RR42_RS15370: RR42_RS15370 - MarR family transcriptional regulator, at 3,324,500 to 3,324,964
_RS15370
RR42_RS15375: RR42_RS15375 - AsnC family transcriptional regulator, at 3,324,978 to 3,325,460
_RS15375
RR42_RS15380: RR42_RS15380 - kynurenine formamidase, at 3,325,623 to 3,326,288
_RS15380
RR42_RS15385: RR42_RS15385 - Kynureninase (EC 3.7.1.3) (from data) , at 3,326,342 to 3,327,598
_RS15385
Position (kb)
3324
3325
3326 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3324.045 kb on + strand, within RR42_RS15365 at 3324.140 kb on + strand, within RR42_RS15365 at 3324.140 kb on + strand, within RR42_RS15365 at 3324.140 kb on + strand, within RR42_RS15365 at 3324.140 kb on + strand, within RR42_RS15365 at 3324.141 kb on - strand, within RR42_RS15365 at 3324.196 kb on + strand, within RR42_RS15365 at 3324.196 kb on + strand, within RR42_RS15365 at 3324.196 kb on + strand, within RR42_RS15365 at 3324.197 kb on - strand, within RR42_RS15365 at 3324.197 kb on - strand, within RR42_RS15365 at 3324.197 kb on - strand, within RR42_RS15365 at 3324.554 kb on + strand, within RR42_RS15370 at 3324.554 kb on + strand, within RR42_RS15370 at 3324.554 kb on + strand, within RR42_RS15370 at 3324.555 kb on - strand, within RR42_RS15370 at 3324.563 kb on + strand, within RR42_RS15370 at 3324.564 kb on - strand, within RR42_RS15370 at 3324.564 kb on - strand, within RR42_RS15370 at 3325.144 kb on + strand, within RR42_RS15375 at 3325.145 kb on - strand at 3325.145 kb on - strand, within RR42_RS15375 at 3325.168 kb on + strand, within RR42_RS15375 at 3325.168 kb on + strand, within RR42_RS15375 at 3325.656 kb on - strand at 3325.656 kb on - strand at 3325.834 kb on - strand, within RR42_RS15380 at 3325.989 kb on + strand, within RR42_RS15380 at 3325.990 kb on - strand, within RR42_RS15380 at 3325.990 kb on - strand, within RR42_RS15380 at 3325.990 kb on - strand, within RR42_RS15380 at 3325.990 kb on - strand, within RR42_RS15380 at 3325.990 kb on - strand, within RR42_RS15380 at 3326.209 kb on - strand, within RR42_RS15380 at 3326.438 kb on + strand at 3326.438 kb on + strand at 3326.438 kb on + strand at 3326.438 kb on + strand at 3326.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 3,324,045 + RR42_RS15365 0.21 -0.4 3,324,140 + RR42_RS15365 0.38 -0.8 3,324,140 + RR42_RS15365 0.38 +0.1 3,324,140 + RR42_RS15365 0.38 -0.5 3,324,140 + RR42_RS15365 0.38 +0.1 3,324,141 - RR42_RS15365 0.38 +1.6 3,324,196 + RR42_RS15365 0.48 -0.6 3,324,196 + RR42_RS15365 0.48 +0.2 3,324,196 + RR42_RS15365 0.48 +0.8 3,324,197 - RR42_RS15365 0.48 -0.0 3,324,197 - RR42_RS15365 0.48 -0.3 3,324,197 - RR42_RS15365 0.48 -1.8 3,324,554 + RR42_RS15370 0.12 -0.9 3,324,554 + RR42_RS15370 0.12 -0.1 3,324,554 + RR42_RS15370 0.12 -0.8 3,324,555 - RR42_RS15370 0.12 -0.5 3,324,563 + RR42_RS15370 0.14 +1.0 3,324,564 - RR42_RS15370 0.14 -1.0 3,324,564 - RR42_RS15370 0.14 -0.5 3,325,144 + RR42_RS15375 0.34 -4.1 3,325,145 - +1.0 3,325,145 - RR42_RS15375 0.35 -2.8 3,325,168 + RR42_RS15375 0.39 -3.8 3,325,168 + RR42_RS15375 0.39 -3.3 3,325,656 - -4.9 3,325,656 - -2.2 3,325,834 - RR42_RS15380 0.32 -4.5 3,325,989 + RR42_RS15380 0.55 -0.6 3,325,990 - RR42_RS15380 0.55 -0.0 3,325,990 - RR42_RS15380 0.55 -2.2 3,325,990 - RR42_RS15380 0.55 -2.7 3,325,990 - RR42_RS15380 0.55 -1.6 3,325,990 - RR42_RS15380 0.55 -2.3 3,326,209 - RR42_RS15380 0.88 -4.8 3,326,438 + -1.0 3,326,438 + -2.4 3,326,438 + -2.8 3,326,438 + -3.6 3,326,438 + -3.0
Or see this region's nucleotide sequence