Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15375

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15365 and RR42_RS15370 are separated by 16 nucleotidesRR42_RS15370 and RR42_RS15375 are separated by 13 nucleotidesRR42_RS15375 and RR42_RS15380 are separated by 162 nucleotidesRR42_RS15380 and RR42_RS15385 are separated by 53 nucleotides RR42_RS15365: RR42_RS15365 - flavin reductase, at 3,323,929 to 3,324,483 _RS15365 RR42_RS15370: RR42_RS15370 - MarR family transcriptional regulator, at 3,324,500 to 3,324,964 _RS15370 RR42_RS15375: RR42_RS15375 - AsnC family transcriptional regulator, at 3,324,978 to 3,325,460 _RS15375 RR42_RS15380: RR42_RS15380 - kynurenine formamidase, at 3,325,623 to 3,326,288 _RS15380 RR42_RS15385: RR42_RS15385 - Kynureninase (EC 3.7.1.3) (from data), at 3,326,342 to 3,327,598 _RS15385 Position (kb) 3324 3325 3326Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3324.045 kb on + strand, within RR42_RS15365at 3324.140 kb on + strand, within RR42_RS15365at 3324.140 kb on + strand, within RR42_RS15365at 3324.140 kb on + strand, within RR42_RS15365at 3324.140 kb on + strand, within RR42_RS15365at 3324.141 kb on - strand, within RR42_RS15365at 3324.196 kb on + strand, within RR42_RS15365at 3324.196 kb on + strand, within RR42_RS15365at 3324.196 kb on + strand, within RR42_RS15365at 3324.197 kb on - strand, within RR42_RS15365at 3324.197 kb on - strand, within RR42_RS15365at 3324.197 kb on - strand, within RR42_RS15365at 3324.554 kb on + strand, within RR42_RS15370at 3324.554 kb on + strand, within RR42_RS15370at 3324.554 kb on + strand, within RR42_RS15370at 3324.555 kb on - strand, within RR42_RS15370at 3324.563 kb on + strand, within RR42_RS15370at 3324.564 kb on - strand, within RR42_RS15370at 3324.564 kb on - strand, within RR42_RS15370at 3325.144 kb on + strand, within RR42_RS15375at 3325.145 kb on - strandat 3325.145 kb on - strand, within RR42_RS15375at 3325.168 kb on + strand, within RR42_RS15375at 3325.168 kb on + strand, within RR42_RS15375at 3325.656 kb on - strandat 3325.656 kb on - strandat 3325.834 kb on - strand, within RR42_RS15380at 3325.989 kb on + strand, within RR42_RS15380at 3325.990 kb on - strand, within RR42_RS15380at 3325.990 kb on - strand, within RR42_RS15380at 3325.990 kb on - strand, within RR42_RS15380at 3325.990 kb on - strand, within RR42_RS15380at 3325.990 kb on - strand, within RR42_RS15380at 3326.209 kb on - strand, within RR42_RS15380at 3326.438 kb on + strandat 3326.438 kb on + strandat 3326.438 kb on + strandat 3326.438 kb on + strandat 3326.438 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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3,324,045 + RR42_RS15365 0.21 -0.4
3,324,140 + RR42_RS15365 0.38 -0.8
3,324,140 + RR42_RS15365 0.38 +0.1
3,324,140 + RR42_RS15365 0.38 -0.5
3,324,140 + RR42_RS15365 0.38 +0.1
3,324,141 - RR42_RS15365 0.38 +1.6
3,324,196 + RR42_RS15365 0.48 -0.6
3,324,196 + RR42_RS15365 0.48 +0.2
3,324,196 + RR42_RS15365 0.48 +0.8
3,324,197 - RR42_RS15365 0.48 -0.0
3,324,197 - RR42_RS15365 0.48 -0.3
3,324,197 - RR42_RS15365 0.48 -1.8
3,324,554 + RR42_RS15370 0.12 -0.9
3,324,554 + RR42_RS15370 0.12 -0.1
3,324,554 + RR42_RS15370 0.12 -0.8
3,324,555 - RR42_RS15370 0.12 -0.5
3,324,563 + RR42_RS15370 0.14 +1.0
3,324,564 - RR42_RS15370 0.14 -1.0
3,324,564 - RR42_RS15370 0.14 -0.5
3,325,144 + RR42_RS15375 0.34 -4.1
3,325,145 - +1.0
3,325,145 - RR42_RS15375 0.35 -2.8
3,325,168 + RR42_RS15375 0.39 -3.8
3,325,168 + RR42_RS15375 0.39 -3.3
3,325,656 - -4.9
3,325,656 - -2.2
3,325,834 - RR42_RS15380 0.32 -4.5
3,325,989 + RR42_RS15380 0.55 -0.6
3,325,990 - RR42_RS15380 0.55 -0.0
3,325,990 - RR42_RS15380 0.55 -2.2
3,325,990 - RR42_RS15380 0.55 -2.7
3,325,990 - RR42_RS15380 0.55 -1.6
3,325,990 - RR42_RS15380 0.55 -2.3
3,326,209 - RR42_RS15380 0.88 -4.8
3,326,438 + -1.0
3,326,438 + -2.4
3,326,438 + -2.8
3,326,438 + -3.6
3,326,438 + -3.0

Or see this region's nucleotide sequence