Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14740

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14735 and RR42_RS14740 are separated by 187 nucleotidesRR42_RS14740 and RR42_RS14745 overlap by 4 nucleotidesRR42_RS14745 and RR42_RS14750 are separated by 195 nucleotides RR42_RS14735: RR42_RS14735 - membrane protein, at 3,176,590 to 3,177,288 _RS14735 RR42_RS14740: RR42_RS14740 - thymidylate synthase, at 3,177,476 to 3,178,270 _RS14740 RR42_RS14745: RR42_RS14745 - diacylglycerol kinase, at 3,178,267 to 3,178,767 _RS14745 RR42_RS14750: RR42_RS14750 - peptidase PMbA, at 3,178,963 to 3,180,333 _RS14750 Position (kb) 3177 3178 3179Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3176.550 kb on + strandat 3176.563 kb on + strandat 3176.567 kb on + strandat 3176.567 kb on + strandat 3177.199 kb on + strand, within RR42_RS14735at 3177.200 kb on - strand, within RR42_RS14735at 3177.200 kb on - strand, within RR42_RS14735at 3177.200 kb on - strand, within RR42_RS14735at 3177.286 kb on + strandat 3177.316 kb on + strandat 3178.784 kb on + strandat 3178.784 kb on + strandat 3178.964 kb on + strandat 3178.964 kb on + strandat 3178.964 kb on + strandat 3179.136 kb on - strand, within RR42_RS14750at 3179.172 kb on - strand, within RR42_RS14750at 3179.172 kb on - strand, within RR42_RS14750at 3179.172 kb on - strand, within RR42_RS14750at 3179.172 kb on - strand, within RR42_RS14750at 3179.172 kb on - strand, within RR42_RS14750

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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3,176,550 + -0.4
3,176,563 + +1.1
3,176,567 + -0.7
3,176,567 + -0.4
3,177,199 + RR42_RS14735 0.87 +0.2
3,177,200 - RR42_RS14735 0.87 -0.5
3,177,200 - RR42_RS14735 0.87 -2.9
3,177,200 - RR42_RS14735 0.87 -0.6
3,177,286 + -1.5
3,177,316 + +0.6
3,178,784 + +0.6
3,178,784 + -0.4
3,178,964 + -0.5
3,178,964 + -1.2
3,178,964 + -0.0
3,179,136 - RR42_RS14750 0.13 +0.4
3,179,172 - RR42_RS14750 0.15 +3.1
3,179,172 - RR42_RS14750 0.15 +0.5
3,179,172 - RR42_RS14750 0.15 -0.1
3,179,172 - RR42_RS14750 0.15 -0.5
3,179,172 - RR42_RS14750 0.15 +1.1

Or see this region's nucleotide sequence