Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07715

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07710 and RR42_RS07715 are separated by 293 nucleotides RR42_RS07710: RR42_RS07710 - chloroperoxidase, at 1,652,606 to 1,653,304 _RS07710 RR42_RS07715: RR42_RS07715 - hydrolase, at 1,653,598 to 1,654,224 _RS07715 Position (kb) 1653 1654 1655Strain fitness (log2 ratio) -2 -1 0 1at 1652.807 kb on + strand, within RR42_RS07710at 1652.809 kb on + strand, within RR42_RS07710at 1652.809 kb on + strand, within RR42_RS07710at 1652.809 kb on + strand, within RR42_RS07710at 1652.809 kb on + strand, within RR42_RS07710at 1652.810 kb on - strand, within RR42_RS07710at 1652.810 kb on - strand, within RR42_RS07710at 1652.810 kb on - strand, within RR42_RS07710at 1653.000 kb on - strand, within RR42_RS07710at 1653.152 kb on + strand, within RR42_RS07710at 1653.153 kb on - strand, within RR42_RS07710at 1653.218 kb on + strand, within RR42_RS07710at 1653.302 kb on + strandat 1653.305 kb on + strandat 1653.433 kb on + strandat 1653.470 kb on + strandat 1653.470 kb on + strandat 1653.471 kb on - strandat 1653.608 kb on + strandat 1653.784 kb on + strand, within RR42_RS07715at 1653.991 kb on + strand, within RR42_RS07715at 1653.991 kb on + strand, within RR42_RS07715at 1654.135 kb on + strand, within RR42_RS07715at 1654.136 kb on - strand, within RR42_RS07715at 1654.136 kb on - strand, within RR42_RS07715at 1654.136 kb on - strand, within RR42_RS07715at 1654.321 kb on + strandat 1654.340 kb on + strandat 1654.410 kb on + strandat 1654.481 kb on - strandat 1654.481 kb on - strandat 1654.580 kb on + strandat 1654.621 kb on - strandat 1654.703 kb on + strandat 1654.845 kb on + strandat 1654.874 kb on - strandat 1654.890 kb on + strandat 1654.890 kb on + strandat 1654.890 kb on + strandat 1654.891 kb on - strandat 1654.934 kb on + strandat 1654.934 kb on + strandat 1654.971 kb on - strandat 1654.971 kb on - strandat 1654.971 kb on - strandat 1654.994 kb on + strandat 1655.073 kb on - strandat 1655.186 kb on + strandat 1655.187 kb on - strandat 1655.205 kb on + strandat 1655.205 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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1,652,807 + RR42_RS07710 0.29 +1.3
1,652,809 + RR42_RS07710 0.29 -0.4
1,652,809 + RR42_RS07710 0.29 -0.1
1,652,809 + RR42_RS07710 0.29 -0.7
1,652,809 + RR42_RS07710 0.29 -2.4
1,652,810 - RR42_RS07710 0.29 +0.9
1,652,810 - RR42_RS07710 0.29 +0.2
1,652,810 - RR42_RS07710 0.29 -1.3
1,653,000 - RR42_RS07710 0.56 -2.3
1,653,152 + RR42_RS07710 0.78 -0.7
1,653,153 - RR42_RS07710 0.78 +0.7
1,653,218 + RR42_RS07710 0.88 +0.5
1,653,302 + +0.2
1,653,305 + +0.3
1,653,433 + +1.6
1,653,470 + -0.1
1,653,470 + -0.3
1,653,471 - -0.3
1,653,608 + -0.2
1,653,784 + RR42_RS07715 0.30 +0.7
1,653,991 + RR42_RS07715 0.63 -0.4
1,653,991 + RR42_RS07715 0.63 -1.0
1,654,135 + RR42_RS07715 0.86 -0.6
1,654,136 - RR42_RS07715 0.86 -0.2
1,654,136 - RR42_RS07715 0.86 -0.5
1,654,136 - RR42_RS07715 0.86 -0.9
1,654,321 + +0.6
1,654,340 + +0.7
1,654,410 + -0.3
1,654,481 - -0.7
1,654,481 - -0.4
1,654,580 + +0.2
1,654,621 - +0.3
1,654,703 + -0.7
1,654,845 + -2.3
1,654,874 - +0.7
1,654,890 + +0.3
1,654,890 + +0.3
1,654,890 + -0.8
1,654,891 - +0.1
1,654,934 + +0.1
1,654,934 + +0.2
1,654,971 - -0.6
1,654,971 - +0.2
1,654,971 - +0.7
1,654,994 + -0.6
1,655,073 - -0.6
1,655,186 + -0.0
1,655,187 - -0.7
1,655,205 + -0.5
1,655,205 + -0.8

Or see this region's nucleotide sequence