Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07125

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07120 and RR42_RS07125 are separated by 56 nucleotidesRR42_RS07125 and RR42_RS07130 overlap by 8 nucleotidesRR42_RS07130 and RR42_RS07135 are separated by 116 nucleotides RR42_RS07120: RR42_RS07120 - hypothetical protein, at 1,526,499 to 1,527,764 _RS07120 RR42_RS07125: RR42_RS07125 - hypothetical protein, at 1,527,821 to 1,528,297 _RS07125 RR42_RS07130: RR42_RS07130 - hypothetical protein, at 1,528,290 to 1,528,499 _RS07130 RR42_RS07135: RR42_RS07135 - hypothetical protein, at 1,528,616 to 1,530,304 _RS07135 Position (kb) 1527 1528 1529Strain fitness (log2 ratio) -3 -2 -1 0 1at 1526.886 kb on - strand, within RR42_RS07120at 1526.979 kb on - strand, within RR42_RS07120at 1527.024 kb on + strand, within RR42_RS07120at 1527.149 kb on + strand, within RR42_RS07120at 1527.149 kb on + strand, within RR42_RS07120at 1527.150 kb on - strand, within RR42_RS07120at 1527.370 kb on + strand, within RR42_RS07120at 1527.407 kb on + strand, within RR42_RS07120at 1527.605 kb on - strand, within RR42_RS07120at 1527.605 kb on - strand, within RR42_RS07120at 1527.666 kb on + strandat 1527.666 kb on + strandat 1527.680 kb on - strandat 1527.714 kb on + strandat 1527.714 kb on + strandat 1527.715 kb on - strandat 1527.715 kb on - strandat 1527.715 kb on - strandat 1527.776 kb on + strandat 1527.777 kb on - strandat 1527.777 kb on - strandat 1527.777 kb on - strandat 1527.863 kb on - strandat 1527.893 kb on + strand, within RR42_RS07125at 1528.037 kb on - strand, within RR42_RS07125at 1528.396 kb on - strand, within RR42_RS07130at 1528.396 kb on - strand, within RR42_RS07130at 1528.637 kb on + strandat 1528.637 kb on + strandat 1528.981 kb on + strand, within RR42_RS07135at 1529.069 kb on + strand, within RR42_RS07135at 1529.110 kb on + strand, within RR42_RS07135at 1529.138 kb on + strand, within RR42_RS07135at 1529.255 kb on + strand, within RR42_RS07135

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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1,526,886 - RR42_RS07120 0.31 -0.5
1,526,979 - RR42_RS07120 0.38 -0.3
1,527,024 + RR42_RS07120 0.41 +0.1
1,527,149 + RR42_RS07120 0.51 -0.5
1,527,149 + RR42_RS07120 0.51 -0.8
1,527,150 - RR42_RS07120 0.51 +1.4
1,527,370 + RR42_RS07120 0.69 -1.1
1,527,407 + RR42_RS07120 0.72 -0.5
1,527,605 - RR42_RS07120 0.87 -1.0
1,527,605 - RR42_RS07120 0.87 +0.2
1,527,666 + -1.6
1,527,666 + -1.8
1,527,680 - +0.7
1,527,714 + -1.1
1,527,714 + -2.0
1,527,715 - -0.5
1,527,715 - +0.0
1,527,715 - +0.0
1,527,776 + -2.6
1,527,777 - +0.2
1,527,777 - -0.5
1,527,777 - +0.3
1,527,863 - -0.2
1,527,893 + RR42_RS07125 0.15 -3.6
1,528,037 - RR42_RS07125 0.45 -0.5
1,528,396 - RR42_RS07130 0.50 +1.1
1,528,396 - RR42_RS07130 0.50 +0.6
1,528,637 + -0.2
1,528,637 + -0.5
1,528,981 + RR42_RS07135 0.22 -0.2
1,529,069 + RR42_RS07135 0.27 -0.3
1,529,110 + RR42_RS07135 0.29 -0.6
1,529,138 + RR42_RS07135 0.31 -0.9
1,529,255 + RR42_RS07135 0.38 +0.5

Or see this region's nucleotide sequence