Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06865 and RR42_RS06870 are separated by 211 nucleotides RR42_RS06870 and RR42_RS06875 are separated by 74 nucleotides RR42_RS06875 and RR42_RS06880 are separated by 18 nucleotides RR42_RS06880 and RR42_RS06885 are separated by 844 nucleotides
RR42_RS06865: RR42_RS06865 - hypothetical protein, at 1,482,573 to 1,482,908
_RS06865
RR42_RS06870: RR42_RS06870 - hypothetical protein, at 1,483,120 to 1,483,488
_RS06870
RR42_RS06875: RR42_RS06875 - hypothetical protein, at 1,483,563 to 1,483,889
_RS06875
RR42_RS06880: RR42_RS06880 - hypothetical protein, at 1,483,908 to 1,484,123
_RS06880
RR42_RS06885: RR42_RS06885 - hypothetical protein, at 1,484,968 to 1,485,171
_RS06885
Position (kb)
1483
1484
1485 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1483.020 kb on - strand at 1483.020 kb on - strand at 1483.242 kb on - strand, within RR42_RS06870 at 1483.242 kb on - strand, within RR42_RS06870 at 1483.297 kb on + strand, within RR42_RS06870 at 1483.329 kb on - strand, within RR42_RS06870 at 1483.514 kb on - strand at 1483.514 kb on - strand at 1483.514 kb on - strand at 1483.514 kb on - strand at 1483.591 kb on - strand at 1483.591 kb on - strand at 1483.622 kb on - strand, within RR42_RS06875 at 1483.638 kb on + strand, within RR42_RS06875 at 1483.858 kb on - strand at 1483.858 kb on - strand at 1483.976 kb on - strand, within RR42_RS06880 at 1484.061 kb on - strand, within RR42_RS06880 at 1484.172 kb on - strand at 1484.231 kb on - strand at 1484.231 kb on - strand at 1484.332 kb on - strand at 1484.418 kb on - strand at 1484.692 kb on - strand at 1484.692 kb on - strand at 1484.692 kb on - strand at 1484.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 1,483,020 - +0.4 1,483,020 - -0.4 1,483,242 - RR42_RS06870 0.33 -0.4 1,483,242 - RR42_RS06870 0.33 -2.8 1,483,297 + RR42_RS06870 0.48 -1.2 1,483,329 - RR42_RS06870 0.57 -0.8 1,483,514 - -0.8 1,483,514 - -0.3 1,483,514 - -0.8 1,483,514 - -0.4 1,483,591 - +1.7 1,483,591 - +0.3 1,483,622 - RR42_RS06875 0.18 +0.4 1,483,638 + RR42_RS06875 0.23 -2.1 1,483,858 - -0.5 1,483,858 - +0.3 1,483,976 - RR42_RS06880 0.31 -2.9 1,484,061 - RR42_RS06880 0.71 +0.1 1,484,172 - -0.3 1,484,231 - -0.2 1,484,231 - -1.5 1,484,332 - -2.2 1,484,418 - -0.1 1,484,692 - -0.4 1,484,692 - +0.1 1,484,692 - +0.1 1,484,962 - -1.1
Or see this region's nucleotide sequence