Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06880

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06865 and RR42_RS06870 are separated by 211 nucleotidesRR42_RS06870 and RR42_RS06875 are separated by 74 nucleotidesRR42_RS06875 and RR42_RS06880 are separated by 18 nucleotidesRR42_RS06880 and RR42_RS06885 are separated by 844 nucleotides RR42_RS06865: RR42_RS06865 - hypothetical protein, at 1,482,573 to 1,482,908 _RS06865 RR42_RS06870: RR42_RS06870 - hypothetical protein, at 1,483,120 to 1,483,488 _RS06870 RR42_RS06875: RR42_RS06875 - hypothetical protein, at 1,483,563 to 1,483,889 _RS06875 RR42_RS06880: RR42_RS06880 - hypothetical protein, at 1,483,908 to 1,484,123 _RS06880 RR42_RS06885: RR42_RS06885 - hypothetical protein, at 1,484,968 to 1,485,171 _RS06885 Position (kb) 1483 1484 1485Strain fitness (log2 ratio) -3 -2 -1 0 1at 1483.020 kb on - strandat 1483.020 kb on - strandat 1483.242 kb on - strand, within RR42_RS06870at 1483.242 kb on - strand, within RR42_RS06870at 1483.297 kb on + strand, within RR42_RS06870at 1483.329 kb on - strand, within RR42_RS06870at 1483.514 kb on - strandat 1483.514 kb on - strandat 1483.514 kb on - strandat 1483.514 kb on - strandat 1483.591 kb on - strandat 1483.591 kb on - strandat 1483.622 kb on - strand, within RR42_RS06875at 1483.638 kb on + strand, within RR42_RS06875at 1483.858 kb on - strandat 1483.858 kb on - strandat 1483.976 kb on - strand, within RR42_RS06880at 1484.061 kb on - strand, within RR42_RS06880at 1484.172 kb on - strandat 1484.231 kb on - strandat 1484.231 kb on - strandat 1484.332 kb on - strandat 1484.418 kb on - strandat 1484.692 kb on - strandat 1484.692 kb on - strandat 1484.692 kb on - strandat 1484.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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1,483,020 - +0.4
1,483,020 - -0.4
1,483,242 - RR42_RS06870 0.33 -0.4
1,483,242 - RR42_RS06870 0.33 -2.8
1,483,297 + RR42_RS06870 0.48 -1.2
1,483,329 - RR42_RS06870 0.57 -0.8
1,483,514 - -0.8
1,483,514 - -0.3
1,483,514 - -0.8
1,483,514 - -0.4
1,483,591 - +1.7
1,483,591 - +0.3
1,483,622 - RR42_RS06875 0.18 +0.4
1,483,638 + RR42_RS06875 0.23 -2.1
1,483,858 - -0.5
1,483,858 - +0.3
1,483,976 - RR42_RS06880 0.31 -2.9
1,484,061 - RR42_RS06880 0.71 +0.1
1,484,172 - -0.3
1,484,231 - -0.2
1,484,231 - -1.5
1,484,332 - -2.2
1,484,418 - -0.1
1,484,692 - -0.4
1,484,692 - +0.1
1,484,692 - +0.1
1,484,962 - -1.1

Or see this region's nucleotide sequence