Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04000

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03995 and RR42_RS04000 are separated by 631 nucleotidesRR42_RS04000 and RR42_RS04005 are separated by 12 nucleotides RR42_RS03995: RR42_RS03995 - diguanylate cyclase, at 883,359 to 886,721 _RS03995 RR42_RS04000: RR42_RS04000 - (2Fe-2S)-binding protein, at 887,353 to 887,811 _RS04000 RR42_RS04005: RR42_RS04005 - carbon monoxide dehydrogenase, at 887,824 to 890,067 _RS04005 Position (kb) 887 888Strain fitness (log2 ratio) -2 -1 0 1at 886.369 kb on - strand, within RR42_RS03995at 886.633 kb on - strandat 886.656 kb on + strandat 886.656 kb on + strandat 886.801 kb on - strandat 886.801 kb on - strandat 886.811 kb on + strandat 886.811 kb on + strandat 886.811 kb on + strandat 886.812 kb on - strandat 886.812 kb on - strandat 886.814 kb on - strandat 886.844 kb on - strandat 886.981 kb on + strandat 886.982 kb on - strandat 886.999 kb on - strandat 887.211 kb on + strandat 887.211 kb on + strandat 887.212 kb on - strandat 887.227 kb on + strandat 887.363 kb on + strandat 887.363 kb on + strandat 887.363 kb on + strandat 887.363 kb on + strandat 887.363 kb on + strandat 887.363 kb on + strandat 887.364 kb on - strandat 887.364 kb on - strandat 887.367 kb on + strandat 887.761 kb on + strand, within RR42_RS04000at 887.761 kb on + strand, within RR42_RS04000at 887.762 kb on - strand, within RR42_RS04000at 887.836 kb on + strandat 887.837 kb on - strandat 888.099 kb on + strand, within RR42_RS04005at 888.184 kb on + strand, within RR42_RS04005at 888.185 kb on - strand, within RR42_RS04005at 888.185 kb on - strand, within RR42_RS04005at 888.185 kb on - strand, within RR42_RS04005at 888.697 kb on + strand, within RR42_RS04005at 888.698 kb on - strand, within RR42_RS04005

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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886,369 - RR42_RS03995 0.90 -1.6
886,633 - +0.3
886,656 + +1.3
886,656 + +0.0
886,801 - -0.2
886,801 - -1.5
886,811 + +0.8
886,811 + -0.2
886,811 + -0.3
886,812 - +0.0
886,812 - +0.8
886,814 - -0.1
886,844 - -0.1
886,981 + +0.1
886,982 - +0.8
886,999 - -0.5
887,211 + +0.0
887,211 + +0.0
887,212 - -0.1
887,227 + -1.3
887,363 + +0.6
887,363 + +0.3
887,363 + -0.5
887,363 + +0.1
887,363 + +0.2
887,363 + +0.4
887,364 - +1.5
887,364 - +0.8
887,367 + -1.9
887,761 + RR42_RS04000 0.89 +0.2
887,761 + RR42_RS04000 0.89 +0.7
887,762 - RR42_RS04000 0.89 -0.0
887,836 + +0.6
887,837 - +1.4
888,099 + RR42_RS04005 0.12 -0.0
888,184 + RR42_RS04005 0.16 -0.1
888,185 - RR42_RS04005 0.16 -0.8
888,185 - RR42_RS04005 0.16 -0.4
888,185 - RR42_RS04005 0.16 +0.2
888,697 + RR42_RS04005 0.39 -0.3
888,698 - RR42_RS04005 0.39 -0.4

Or see this region's nucleotide sequence