Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02940 and RR42_RS02945 are separated by 24 nucleotides RR42_RS02945 and RR42_RS02950 overlap by 4 nucleotides RR42_RS02950 and RR42_RS02955 overlap by 4 nucleotides RR42_RS02955 and RR42_RS02960 overlap by 1 nucleotides
RR42_RS02940: RR42_RS02940 - phosphoribosyl-dephospho-CoA transferase, at 654,524 to 655,162
_RS02940
RR42_RS02945: RR42_RS02945 - malonate decarboxylase subunit gamma, at 655,187 to 656,005
_RS02945
RR42_RS02950: RR42_RS02950 - malonate decarboxylase subunit beta, at 656,002 to 656,853
_RS02950
RR42_RS02955: RR42_RS02955 - malonate decarboxylase subunit delta, at 656,850 to 657,164
_RS02955
RR42_RS02960: RR42_RS02960 - triphosphoribosyl-dephospho-CoA synthase, at 657,164 to 658,069
_RS02960
Position (kb) 656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 655.401 kb on + strand, within RR42_RS02945 at 655.401 kb on + strand, within RR42_RS02945 at 655.416 kb on + strand, within RR42_RS02945 at 655.417 kb on - strand, within RR42_RS02945 at 655.417 kb on - strand, within RR42_RS02945 at 655.508 kb on + strand, within RR42_RS02945 at 655.509 kb on - strand, within RR42_RS02945 at 655.555 kb on - strand, within RR42_RS02945 at 655.871 kb on - strand, within RR42_RS02945 at 656.024 kb on + strand at 656.024 kb on + strand at 656.025 kb on - strand at 656.090 kb on + strand, within RR42_RS02950 at 656.186 kb on + strand, within RR42_RS02950 at 656.186 kb on + strand, within RR42_RS02950 at 656.264 kb on + strand, within RR42_RS02950 at 657.165 kb on + strand at 657.568 kb on - strand, within RR42_RS02960 at 657.568 kb on - strand, within RR42_RS02960 at 657.670 kb on + strand, within RR42_RS02960 at 657.671 kb on - strand, within RR42_RS02960
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 655,401 + RR42_RS02945 0.26 +0.4 655,401 + RR42_RS02945 0.26 -0.9 655,416 + RR42_RS02945 0.28 +0.2 655,417 - RR42_RS02945 0.28 +0.6 655,417 - RR42_RS02945 0.28 -1.2 655,508 + RR42_RS02945 0.39 +0.0 655,509 - RR42_RS02945 0.39 -0.1 655,555 - RR42_RS02945 0.45 +0.6 655,871 - RR42_RS02945 0.84 -1.1 656,024 + +0.3 656,024 + +1.7 656,025 - -0.1 656,090 + RR42_RS02950 0.10 -1.7 656,186 + RR42_RS02950 0.22 +1.3 656,186 + RR42_RS02950 0.22 -2.9 656,264 + RR42_RS02950 0.31 -0.3 657,165 + -0.1 657,568 - RR42_RS02960 0.45 +0.0 657,568 - RR42_RS02960 0.45 +1.1 657,670 + RR42_RS02960 0.56 +1.8 657,671 - RR42_RS02960 0.56 +1.7
Or see this region's nucleotide sequence