Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01880 and RR42_RS01885 are separated by 226 nucleotides RR42_RS01885 and RR42_RS01890 are separated by 34 nucleotides RR42_RS01890 and RR42_RS01895 are separated by 135 nucleotides
RR42_RS01880: RR42_RS01880 - cytochrome oxidase subunit I, at 423,935 to 425,539
_RS01880
RR42_RS01885: RR42_RS01885 - cytochrome C oxidase assembly protein, at 425,766 to 426,380
_RS01885
RR42_RS01890: RR42_RS01890 - membrane protein, at 426,415 to 426,627
_RS01890
RR42_RS01895: RR42_RS01895 - MFS transporter, at 426,763 to 427,623
_RS01895
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 424.805 kb on - strand, within RR42_RS01880 at 424.805 kb on - strand, within RR42_RS01880 at 424.818 kb on - strand, within RR42_RS01880 at 424.913 kb on + strand, within RR42_RS01880 at 424.914 kb on - strand, within RR42_RS01880 at 424.914 kb on - strand, within RR42_RS01880 at 425.105 kb on + strand, within RR42_RS01880 at 425.130 kb on - strand, within RR42_RS01880 at 425.130 kb on - strand, within RR42_RS01880 at 425.174 kb on + strand, within RR42_RS01880 at 425.175 kb on - strand, within RR42_RS01880 at 425.175 kb on - strand, within RR42_RS01880 at 425.175 kb on - strand, within RR42_RS01880 at 425.208 kb on - strand, within RR42_RS01880 at 425.208 kb on - strand, within RR42_RS01880 at 425.394 kb on - strand at 425.394 kb on - strand at 425.537 kb on + strand at 425.537 kb on + strand at 425.537 kb on + strand at 425.563 kb on - strand at 425.759 kb on + strand at 425.886 kb on + strand, within RR42_RS01885 at 425.941 kb on - strand, within RR42_RS01885 at 426.139 kb on - strand, within RR42_RS01885 at 426.282 kb on - strand, within RR42_RS01885 at 426.282 kb on - strand, within RR42_RS01885 at 426.291 kb on + strand, within RR42_RS01885 at 426.292 kb on - strand, within RR42_RS01885 at 426.294 kb on - strand, within RR42_RS01885 at 426.662 kb on + strand at 426.663 kb on - strand at 426.666 kb on + strand at 426.666 kb on + strand at 426.791 kb on - strand at 426.791 kb on - strand at 426.793 kb on + strand at 426.794 kb on - strand at 426.831 kb on + strand at 426.898 kb on + strand, within RR42_RS01895 at 426.898 kb on + strand, within RR42_RS01895 at 426.898 kb on + strand, within RR42_RS01895 at 426.986 kb on - strand, within RR42_RS01895 at 427.081 kb on + strand, within RR42_RS01895 at 427.082 kb on - strand, within RR42_RS01895 at 427.154 kb on + strand, within RR42_RS01895 at 427.299 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 424,805 - RR42_RS01880 0.54 +0.4 424,805 - RR42_RS01880 0.54 -0.8 424,818 - RR42_RS01880 0.55 -0.5 424,913 + RR42_RS01880 0.61 -1.7 424,914 - RR42_RS01880 0.61 -1.0 424,914 - RR42_RS01880 0.61 -0.0 425,105 + RR42_RS01880 0.73 -1.4 425,130 - RR42_RS01880 0.74 -1.4 425,130 - RR42_RS01880 0.74 -1.2 425,174 + RR42_RS01880 0.77 +0.6 425,175 - RR42_RS01880 0.77 -2.8 425,175 - RR42_RS01880 0.77 -1.5 425,175 - RR42_RS01880 0.77 -0.4 425,208 - RR42_RS01880 0.79 -3.0 425,208 - RR42_RS01880 0.79 -0.7 425,394 - +1.2 425,394 - +0.4 425,537 + +0.5 425,537 + +0.2 425,537 + -0.3 425,563 - -1.7 425,759 + -0.2 425,886 + RR42_RS01885 0.20 -1.5 425,941 - RR42_RS01885 0.28 -1.0 426,139 - RR42_RS01885 0.61 -0.7 426,282 - RR42_RS01885 0.84 -3.5 426,282 - RR42_RS01885 0.84 -0.8 426,291 + RR42_RS01885 0.85 -1.2 426,292 - RR42_RS01885 0.86 -1.0 426,294 - RR42_RS01885 0.86 -1.8 426,662 + -1.4 426,663 - +0.6 426,666 + +0.8 426,666 + +0.4 426,791 - +0.7 426,791 - -0.2 426,793 + -0.8 426,794 - -0.4 426,831 + -1.2 426,898 + RR42_RS01895 0.16 +0.4 426,898 + RR42_RS01895 0.16 -1.3 426,898 + RR42_RS01895 0.16 -0.2 426,986 - RR42_RS01895 0.26 -1.5 427,081 + RR42_RS01895 0.37 -0.7 427,082 - RR42_RS01895 0.37 -0.6 427,154 + RR42_RS01895 0.45 +3.2 427,299 + RR42_RS01895 0.62 -0.1 427,366 + RR42_RS01895 0.70 -0.6 427,366 + RR42_RS01895 0.70 -2.8
Or see this region's nucleotide sequence