Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01340 and RR42_RS01345 are separated by 1 nucleotides RR42_RS01345 and RR42_RS01350 are separated by 53 nucleotides
RR42_RS01340: RR42_RS01340 - hypothetical protein, at 304,575 to 305,597
_RS01340
RR42_RS01345: RR42_RS01345 - CoA-binding protein, at 305,599 to 307,710
_RS01345
RR42_RS01350: RR42_RS01350 - biotin carboxylase, at 307,764 to 309,137
_RS01350
Position (kb) 305
306
307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.121 kb on - strand, within RR42_RS01340 at 305.168 kb on + strand, within RR42_RS01340 at 305.175 kb on + strand, within RR42_RS01340 at 305.175 kb on + strand, within RR42_RS01340 at 305.176 kb on - strand, within RR42_RS01340 at 305.361 kb on + strand, within RR42_RS01340 at 305.388 kb on + strand, within RR42_RS01340 at 305.388 kb on + strand, within RR42_RS01340 at 305.388 kb on + strand, within RR42_RS01340 at 305.389 kb on - strand, within RR42_RS01340 at 305.389 kb on - strand, within RR42_RS01340 at 305.695 kb on + strand at 305.696 kb on - strand at 305.696 kb on - strand at 305.696 kb on - strand at 305.728 kb on + strand at 305.893 kb on + strand, within RR42_RS01345 at 305.893 kb on + strand, within RR42_RS01345 at 305.893 kb on + strand, within RR42_RS01345 at 305.894 kb on - strand, within RR42_RS01345 at 305.994 kb on + strand, within RR42_RS01345 at 305.995 kb on - strand, within RR42_RS01345 at 306.158 kb on - strand, within RR42_RS01345 at 306.160 kb on - strand, within RR42_RS01345 at 306.250 kb on + strand, within RR42_RS01345 at 306.251 kb on - strand, within RR42_RS01345 at 306.487 kb on - strand, within RR42_RS01345 at 306.551 kb on + strand, within RR42_RS01345 at 306.552 kb on - strand, within RR42_RS01345 at 306.699 kb on + strand, within RR42_RS01345 at 306.703 kb on + strand, within RR42_RS01345 at 306.703 kb on + strand, within RR42_RS01345 at 307.038 kb on - strand, within RR42_RS01345 at 307.309 kb on + strand, within RR42_RS01345 at 307.310 kb on - strand, within RR42_RS01345 at 307.384 kb on + strand, within RR42_RS01345 at 307.384 kb on + strand, within RR42_RS01345 at 307.385 kb on - strand, within RR42_RS01345 at 307.434 kb on - strand, within RR42_RS01345 at 307.643 kb on + strand at 307.643 kb on + strand at 307.644 kb on - strand at 307.739 kb on - strand at 307.739 kb on - strand at 307.872 kb on + strand at 307.929 kb on + strand, within RR42_RS01350
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 305,120 + RR42_RS01340 0.53 -0.2 305,120 + RR42_RS01340 0.53 +1.2 305,120 + RR42_RS01340 0.53 +0.2 305,120 + RR42_RS01340 0.53 +0.0 305,120 + RR42_RS01340 0.53 -0.4 305,121 - RR42_RS01340 0.53 +0.5 305,168 + RR42_RS01340 0.58 +0.9 305,175 + RR42_RS01340 0.59 -0.9 305,175 + RR42_RS01340 0.59 +0.8 305,176 - RR42_RS01340 0.59 +0.4 305,361 + RR42_RS01340 0.77 +0.5 305,388 + RR42_RS01340 0.79 -0.4 305,388 + RR42_RS01340 0.79 -1.1 305,388 + RR42_RS01340 0.79 +1.7 305,389 - RR42_RS01340 0.80 -0.2 305,389 - RR42_RS01340 0.80 -0.1 305,695 + +0.1 305,696 - -2.4 305,696 - +0.4 305,696 - -0.4 305,728 + -1.0 305,893 + RR42_RS01345 0.14 -0.4 305,893 + RR42_RS01345 0.14 -1.1 305,893 + RR42_RS01345 0.14 +0.4 305,894 - RR42_RS01345 0.14 +0.2 305,994 + RR42_RS01345 0.19 +0.9 305,995 - RR42_RS01345 0.19 +1.2 306,158 - RR42_RS01345 0.26 +0.6 306,160 - RR42_RS01345 0.27 +0.8 306,250 + RR42_RS01345 0.31 -0.8 306,251 - RR42_RS01345 0.31 -0.5 306,487 - RR42_RS01345 0.42 +0.3 306,551 + RR42_RS01345 0.45 -0.0 306,552 - RR42_RS01345 0.45 +0.3 306,699 + RR42_RS01345 0.52 -0.1 306,703 + RR42_RS01345 0.52 +0.6 306,703 + RR42_RS01345 0.52 -0.9 307,038 - RR42_RS01345 0.68 +0.2 307,309 + RR42_RS01345 0.81 -0.8 307,310 - RR42_RS01345 0.81 +0.2 307,384 + RR42_RS01345 0.85 -0.3 307,384 + RR42_RS01345 0.85 -0.7 307,385 - RR42_RS01345 0.85 -0.1 307,434 - RR42_RS01345 0.87 +0.1 307,643 + -1.8 307,643 + -2.6 307,644 - +0.0 307,739 - +1.2 307,739 - -0.7 307,872 + -0.4 307,929 + RR42_RS01350 0.12 +0.6
Or see this region's nucleotide sequence