Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08265

Experiment: H2 McCas, 5g/L bicarb, 40 psi H2CO2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 5g/L bicarb, 40 psi H2CO2
1,520,391	+		MMJJ_RS08255	0.63	-0.8
1,520,442	-		MMJJ_RS08255	0.73	-0.7
1,520,482	+		MMJJ_RS08255	0.81	+0.8
1,520,488	-		MMJJ_RS08255	0.82	-0.3
1,520,488	-		MMJJ_RS08255	0.82	-0.3
1,520,506	+		MMJJ_RS08255	0.85	+1.6
1,520,513	-		MMJJ_RS08255	0.87	+0.8
1,520,513	-		MMJJ_RS08255	0.87	+0.1
1,520,514	+		MMJJ_RS08255	0.87	-0.8
1,520,514	+		MMJJ_RS08255	0.87	-0.0
1,520,517	-		MMJJ_RS08255	0.87	-1.8
1,520,518	+		MMJJ_RS08255	0.88	-1.2
1,520,522	-		MMJJ_RS08255	0.88	+0.9
1,520,523	+		MMJJ_RS08255	0.88	+0.8
1,520,548	+				+0.5
1,520,576	+				-1.2
1,520,578	+				+0.2
1,520,578	+				+0.4
1,520,578	+				+2.4
1,520,605	-				+2.4
1,520,606	+				+2.0
1,520,606	+				+2.1
1,520,611	-				+1.7
1,520,611	-				+1.1
1,520,611	-				+2.5
1,520,632	-				+0.7
1,520,632	-				+2.2
1,520,636	-				+2.0
1,520,636	-				+2.7
1,520,636	-				+3.6
1,520,636	-				+1.7
1,520,636	-				+1.3
1,520,653	-				+0.6
1,520,653	-				+4.6
1,520,654	+				-0.5
1,520,745	-		MMJJ_RS08260	0.21	+3.6
1,520,746	+		MMJJ_RS08260	0.21	+2.1
1,520,758	-		MMJJ_RS08260	0.23	+1.6
1,520,784	-		MMJJ_RS08260	0.26	+2.4
1,520,788	+		MMJJ_RS08260	0.27	+2.3
1,520,813	+		MMJJ_RS08260	0.30	+0.7
1,520,815	-		MMJJ_RS08260	0.30	+2.0
1,520,816	+		MMJJ_RS08260	0.30	+2.3
1,520,853	-		MMJJ_RS08260	0.35	+4.0
1,520,910	-		MMJJ_RS08260	0.43	+0.9
1,520,911	+		MMJJ_RS08260	0.43	+2.0
1,520,938	-		MMJJ_RS08260	0.46	+1.7
1,520,939	+		MMJJ_RS08260	0.47	+2.3
1,520,939	+		MMJJ_RS08260	0.47	+0.9
1,520,946	-		MMJJ_RS08260	0.48	+2.1
1,520,946	-		MMJJ_RS08260	0.48	+2.5
1,521,001	+		MMJJ_RS08260	0.55	+3.0
1,521,034	-		MMJJ_RS08260	0.59	+3.1
1,521,034	-		MMJJ_RS08260	0.59	+2.0
1,521,034	-		MMJJ_RS08260	0.59	+2.1
1,521,034	-		MMJJ_RS08260	0.59	+1.8
1,521,034	-		MMJJ_RS08260	0.59	+3.0
1,521,035	+		MMJJ_RS08260	0.59	+1.6
1,521,035	+		MMJJ_RS08260	0.59	+4.3
1,521,035	+		MMJJ_RS08260	0.59	+1.6
1,521,035	+		MMJJ_RS08260	0.59	+1.1
1,521,035	+		MMJJ_RS08260	0.59	+2.6
1,521,035	+		MMJJ_RS08260	0.59	+0.6
1,521,036	-		MMJJ_RS08260	0.59	+2.4
1,521,037	+		MMJJ_RS08260	0.59	+0.3
1,521,037	+		MMJJ_RS08260	0.59	+0.8
1,521,037	+		MMJJ_RS08260	0.59	+1.8
1,521,070	-		MMJJ_RS08260	0.64	+1.2
1,521,078	-		MMJJ_RS08260	0.65	-1.2
1,521,081	+		MMJJ_RS08260	0.65	+0.9
1,521,108	+		MMJJ_RS08260	0.69	+2.6
1,521,169	-		MMJJ_RS08260	0.77	+2.6
1,521,191	+		MMJJ_RS08260	0.80	+1.3
1,521,193	-		MMJJ_RS08260	0.80	+2.5
1,521,198	-		MMJJ_RS08260	0.81	+1.1
1,521,211	-		MMJJ_RS08260	0.82	+3.4
1,521,212	+		MMJJ_RS08260	0.82	+2.9
1,521,238	-		MMJJ_RS08260	0.86	+2.6
1,521,304	+				+2.9
1,521,309	-				+2.5
1,521,340	-				+3.0
1,521,345	-				+1.9
1,521,370	-				+2.7
1,521,371	+				+0.4
1,521,471	+		MMJJ_RS08265	0.10	+2.2
1,521,481	+		MMJJ_RS08265	0.11	+2.3
1,521,481	+		MMJJ_RS08265	0.11	+2.2
1,521,553	+		MMJJ_RS08265	0.18	+1.6
1,521,553	+		MMJJ_RS08265	0.18	+2.5
1,521,570	-		MMJJ_RS08265	0.20	+1.9
1,521,618	-		MMJJ_RS08265	0.24	+4.5
1,521,619	+		MMJJ_RS08265	0.24	+1.7
1,521,619	+		MMJJ_RS08265	0.24	+2.7
1,521,652	+		MMJJ_RS08265	0.28	+3.4
1,521,652	+		MMJJ_RS08265	0.28	+2.2
1,521,713	+		MMJJ_RS08265	0.33	+2.5
1,521,729	-		MMJJ_RS08265	0.35	+2.3
1,521,729	-		MMJJ_RS08265	0.35	-0.6
1,521,729	-		MMJJ_RS08265	0.35	+2.3
1,521,729	-		MMJJ_RS08265	0.35	+2.3
1,521,729	-		MMJJ_RS08265	0.35	+0.4
1,521,730	+		MMJJ_RS08265	0.35	+2.7
1,521,730	+		MMJJ_RS08265	0.35	+1.9
1,521,730	+		MMJJ_RS08265	0.35	+1.6
1,521,730	+		MMJJ_RS08265	0.35	+1.2
1,521,730	+		MMJJ_RS08265	0.35	+2.8
1,521,731	-		MMJJ_RS08265	0.35	+2.6
1,521,731	-		MMJJ_RS08265	0.35	+0.5
1,521,736	-		MMJJ_RS08265	0.36	+1.5
1,521,741	+		MMJJ_RS08265	0.36	+0.4
1,521,756	-		MMJJ_RS08265	0.38	+2.2
1,521,757	+		MMJJ_RS08265	0.38	+1.2
1,521,759	-		MMJJ_RS08265	0.38	+1.8
1,521,831	-		MMJJ_RS08265	0.45	-1.2
1,521,831	-		MMJJ_RS08265	0.45	+2.1
1,521,831	-		MMJJ_RS08265	0.45	+1.9
1,521,839	-		MMJJ_RS08265	0.45	+2.8
1,521,840	+		MMJJ_RS08265	0.46	+2.6
1,521,858	-		MMJJ_RS08265	0.47	+1.2
1,521,858	-		MMJJ_RS08265	0.47	+1.8
1,521,866	-		MMJJ_RS08265	0.48	+3.0
1,521,878	-		MMJJ_RS08265	0.49	+0.9
1,521,891	-		MMJJ_RS08265	0.50	+1.5
1,521,936	-		MMJJ_RS08265	0.55	-1.4
1,521,937	+		MMJJ_RS08265	0.55	+2.1
1,521,981	-		MMJJ_RS08265	0.59	+3.9
1,522,066	+		MMJJ_RS08265	0.67	+3.8
1,522,112	-		MMJJ_RS08265	0.72	+1.9
1,522,112	-		MMJJ_RS08265	0.72	+1.6
1,522,112	-		MMJJ_RS08265	0.72	+0.8
1,522,112	-		MMJJ_RS08265	0.72	+2.2
1,522,112	-		MMJJ_RS08265	0.72	+1.7
1,522,113	+		MMJJ_RS08265	0.72	+1.1
1,522,113	+		MMJJ_RS08265	0.72	+2.1
1,522,115	+		MMJJ_RS08265	0.72	+2.0
1,522,137	-		MMJJ_RS08265	0.74	+2.0
1,522,226	-		MMJJ_RS08265	0.82	+2.3
1,522,226	-		MMJJ_RS08265	0.82	+1.7
1,522,227	+		MMJJ_RS08265	0.83	+0.6
1,522,257	-		MMJJ_RS08265	0.85	+2.3
1,522,258	+		MMJJ_RS08265	0.85	+1.2
1,522,269	-		MMJJ_RS08265	0.87	+3.6
1,522,316	+				+1.7
1,522,339	+				-2.6
1,522,347	-				+2.0
1,522,376	-				+2.0
1,522,376	-				+1.0
1,522,391	-				+2.5
1,522,391	-				+2.4
1,522,391	-				+1.6
1,522,392	+				-0.9
1,522,394	-				+1.7
1,522,429	-				+2.4
1,522,459	-				+2.5
1,522,462	+				+2.8
1,522,465	-				+1.5
1,522,465	-				+1.8
1,522,466	+				+2.3
1,522,476	-				-1.2
1,522,477	+				+0.4
1,522,506	-				-1.5
1,522,520	+				-1.9
1,522,520	+				-0.2
1,522,539	+				+1.1
1,522,563	+				+2.3
1,522,598	+				+3.5
1,522,599	-				+1.0
1,522,600	+				+2.1
1,522,600	+				+3.0
1,522,626	-				-2.3
1,522,627	+				-0.6
1,522,648	-		MMJJ_RS08270	0.12	+1.8
1,522,649	+		MMJJ_RS08270	0.12	+2.5
1,522,649	+		MMJJ_RS08270	0.12	+0.1
1,522,651	+		MMJJ_RS08270	0.12	+1.1
1,522,688	-		MMJJ_RS08270	0.15	+4.1
1,522,730	+		MMJJ_RS08270	0.19	-0.0
1,522,733	-		MMJJ_RS08270	0.19	-0.2
1,522,779	-		MMJJ_RS08270	0.23	+1.2
1,522,780	+		MMJJ_RS08270	0.23	+1.4
1,522,791	-		MMJJ_RS08270	0.24	+1.2
1,522,791	-		MMJJ_RS08270	0.24	+2.2
1,522,791	-		MMJJ_RS08270	0.24	+1.1
1,522,791	-		MMJJ_RS08270	0.24	+1.7
1,522,794	-		MMJJ_RS08270	0.24	+2.2
1,522,794	-		MMJJ_RS08270	0.24	+2.0
1,522,821	-		MMJJ_RS08270	0.27	+3.2
1,522,821	-		MMJJ_RS08270	0.27	+2.4
1,522,821	-		MMJJ_RS08270	0.27	+2.7
1,522,822	+		MMJJ_RS08270	0.27	+0.9
1,522,822	+		MMJJ_RS08270	0.27	+1.7
1,522,822	+		MMJJ_RS08270	0.27	+1.1
1,522,823	-		MMJJ_RS08270	0.27	-0.2
1,522,823	-		MMJJ_RS08270	0.27	+2.6
1,522,823	-		MMJJ_RS08270	0.27	+1.8
1,522,823	-		MMJJ_RS08270	0.27	+1.2
1,522,823	-		MMJJ_RS08270	0.27	+1.0
1,522,823	-		MMJJ_RS08270	0.27	+1.6
1,522,824	+		MMJJ_RS08270	0.27	+2.6
1,522,824	+		MMJJ_RS08270	0.27	-0.2
1,522,824	+		MMJJ_RS08270	0.27	+0.7
1,522,824	+		MMJJ_RS08270	0.27	+0.9
1,522,824	+		MMJJ_RS08270	0.27	+2.1
1,522,825	-		MMJJ_RS08270	0.27	+1.2
1,522,856	-		MMJJ_RS08270	0.30	+1.9
1,522,856	-		MMJJ_RS08270	0.30	+1.3
1,522,860	-		MMJJ_RS08270	0.30	+1.7
1,522,861	+		MMJJ_RS08270	0.30	+1.4
1,522,899	-		MMJJ_RS08270	0.34	+2.7
1,522,899	-		MMJJ_RS08270	0.34	+0.4
1,522,900	+		MMJJ_RS08270	0.34	+1.7
1,522,991	+		MMJJ_RS08270	0.42	+2.4
1,523,057	-		MMJJ_RS08270	0.48	+1.6
1,523,058	+		MMJJ_RS08270	0.48	+1.2
1,523,070	-		MMJJ_RS08270	0.49	+2.5
1,523,119	+		MMJJ_RS08270	0.53	-0.4
1,523,176	+		MMJJ_RS08270	0.58	+1.1
1,523,245	+		MMJJ_RS08270	0.64	+2.9
1,523,245	+		MMJJ_RS08270	0.64	+2.7
1,523,248	+		MMJJ_RS08270	0.65	+0.8
1,523,248	+		MMJJ_RS08270	0.65	+0.5
1,523,259	-		MMJJ_RS08270	0.66	+1.6
1,523,260	+		MMJJ_RS08270	0.66	+2.4
1,523,282	-		MMJJ_RS08270	0.68	+1.4
1,523,291	-		MMJJ_RS08270	0.69	+2.1
1,523,301	+		MMJJ_RS08270	0.69	+0.9
1,523,342	+		MMJJ_RS08270	0.73	+0.8
1,523,396	-		MMJJ_RS08270	0.78	+1.7
1,523,396	-		MMJJ_RS08270	0.78	-0.3
1,523,399	+		MMJJ_RS08270	0.78	-0.0
1,523,409	-		MMJJ_RS08270	0.79	+0.9
1,523,409	-		MMJJ_RS08270	0.79	+1.1
1,523,409	-		MMJJ_RS08270	0.79	+1.0