Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07235

Experiment: H2 McCas, 5g/L bicarb, 40 psi H2CO2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 5g/L bicarb, 40 psi H2CO2
1,323,442	-		MMJJ_RS07225	0.59	+2.8
1,323,442	-		MMJJ_RS07225	0.59	+2.7
1,323,479	-		MMJJ_RS07225	0.65	-0.6
1,323,480	+		MMJJ_RS07225	0.65	+4.0
1,323,548	+		MMJJ_RS07225	0.75	+3.2
1,323,548	+		MMJJ_RS07225	0.75	+0.7
1,323,563	-		MMJJ_RS07225	0.77	+1.9
1,323,563	-		MMJJ_RS07225	0.77	+2.1
1,323,563	-		MMJJ_RS07225	0.77	+2.9
1,323,564	+		MMJJ_RS07225	0.77	+0.5
1,323,564	+		MMJJ_RS07225	0.77	+1.6
1,323,569	-		MMJJ_RS07225	0.78	+1.4
1,323,570	+		MMJJ_RS07225	0.78	+2.0
1,323,617	-		MMJJ_RS07225	0.85	+1.5
1,323,623	-		MMJJ_RS07225	0.86	+1.3
1,323,624	+		MMJJ_RS07225	0.86	+1.5
1,323,641	-		MMJJ_RS07225	0.88	+0.6
1,323,642	+		MMJJ_RS07225	0.88	+0.9
1,323,674	-				+1.1
1,323,695	-				+1.2
1,323,695	-				+1.6
1,323,695	-				+3.7
1,323,696	+				+3.3
1,323,725	+				+3.2
1,323,737	-				+2.3
1,323,738	+				+1.0
1,323,824	+		MMJJ_RS07230	0.17	+1.6
1,323,824	+		MMJJ_RS07230	0.17	+0.4
1,323,826	-		MMJJ_RS07230	0.17	-0.2
1,323,826	-		MMJJ_RS07230	0.17	+2.2
1,323,845	-		MMJJ_RS07230	0.21	+3.3
1,323,845	-		MMJJ_RS07230	0.21	+1.4
1,323,846	+		MMJJ_RS07230	0.21	+0.6
1,323,871	+		MMJJ_RS07230	0.26	+0.5
1,323,898	+		MMJJ_RS07230	0.31	+0.4
1,323,901	-		MMJJ_RS07230	0.31	-0.9
1,323,902	+		MMJJ_RS07230	0.32	-0.4
1,323,909	+		MMJJ_RS07230	0.33	+3.9
1,323,909	+		MMJJ_RS07230	0.33	+2.4
1,323,909	+		MMJJ_RS07230	0.33	-0.9
1,323,915	-		MMJJ_RS07230	0.34	+3.2
1,323,981	-		MMJJ_RS07230	0.47	+1.3
1,323,981	-		MMJJ_RS07230	0.47	+1.6
1,323,981	-		MMJJ_RS07230	0.47	+1.4
1,323,982	+		MMJJ_RS07230	0.47	+1.5
1,323,982	+		MMJJ_RS07230	0.47	+1.5
1,323,982	+		MMJJ_RS07230	0.47	+1.5
1,323,986	+		MMJJ_RS07230	0.48	+4.7
1,323,990	-		MMJJ_RS07230	0.48	+2.1
1,323,991	+		MMJJ_RS07230	0.49	+0.2
1,324,033	-		MMJJ_RS07230	0.57	+2.1
1,324,141	-		MMJJ_RS07230	0.77	+1.0
1,324,173	-		MMJJ_RS07230	0.83	+1.7
1,324,174	+		MMJJ_RS07230	0.83	+1.3
1,324,197	-		MMJJ_RS07230	0.88	+1.2
1,324,219	+				+2.1
1,324,228	-				-1.0
1,324,236	+				+1.5
1,324,253	-				+2.6
1,324,287	+				+1.8
1,324,287	+				+0.6
1,324,298	+				+1.0
1,324,302	-				+2.9
1,324,327	+				+0.3
1,324,374	-				+1.0
1,324,422	+				+1.4
1,324,437	-				+1.6
1,324,438	+				+1.7
1,324,438	+				+0.5
1,324,444	-				+2.0
1,324,444	-				+1.3
1,324,454	-				+1.0
1,324,455	+				+3.0
1,324,469	+				+1.4
1,324,469	+				+1.0
1,324,473	+				+1.2
1,324,473	+				+1.6
1,324,473	+				-1.1
1,324,473	+				+1.6
1,324,540	-		MMJJ_RS07235	0.14	+1.1
1,324,540	-		MMJJ_RS07235	0.14	+3.5
1,324,541	+		MMJJ_RS07235	0.14	+2.5
1,324,639	-		MMJJ_RS07235	0.22	+3.9
1,324,639	-		MMJJ_RS07235	0.22	+1.4
1,324,639	-		MMJJ_RS07235	0.22	+0.5
1,324,646	-		MMJJ_RS07235	0.23	+1.5
1,324,647	+		MMJJ_RS07235	0.23	+1.3
1,324,647	+		MMJJ_RS07235	0.23	+2.2
1,324,647	+		MMJJ_RS07235	0.23	+1.7
1,324,650	-		MMJJ_RS07235	0.23	+1.6
1,324,650	-		MMJJ_RS07235	0.23	+2.7
1,324,651	+		MMJJ_RS07235	0.23	+2.2
1,324,659	-		MMJJ_RS07235	0.24	+1.3
1,324,659	-				+1.7
1,324,689	+		MMJJ_RS07235	0.26	+2.1
1,324,785	+		MMJJ_RS07235	0.34	+0.7
1,324,800	+		MMJJ_RS07235	0.35	+1.9
1,324,828	-		MMJJ_RS07235	0.37	+1.7
1,324,879	-		MMJJ_RS07235	0.42	+1.0
1,324,880	+		MMJJ_RS07235	0.42	+1.0
1,324,880	+		MMJJ_RS07235	0.42	+1.4
1,324,882	-		MMJJ_RS07235	0.42	+2.8
1,324,882	-		MMJJ_RS07235	0.42	+1.2
1,324,882	-		MMJJ_RS07235	0.42	+2.2
1,324,896	-		MMJJ_RS07235	0.43	+3.3
1,324,896	-		MMJJ_RS07235	0.43	+1.9
1,324,905	-		MMJJ_RS07235	0.44	+1.2
1,324,906	+		MMJJ_RS07235	0.44	+3.7
1,324,923	+		MMJJ_RS07235	0.45	-1.6
1,324,952	-		MMJJ_RS07235	0.47	+2.9
1,324,953	+		MMJJ_RS07235	0.47	+1.7
1,324,961	+		MMJJ_RS07235	0.48	+1.0
1,324,976	-		MMJJ_RS07235	0.49	+1.8
1,324,976	-		MMJJ_RS07235	0.49	-0.3
1,324,980	-		MMJJ_RS07235	0.50	+1.5
1,324,981	+		MMJJ_RS07235	0.50	+1.8
1,325,004	-		MMJJ_RS07235	0.52	+1.3
1,325,004	-		MMJJ_RS07235	0.52	+1.4
1,325,004	-		MMJJ_RS07235	0.52	+1.2
1,325,005	+		MMJJ_RS07235	0.52	+1.1
1,325,005	+		MMJJ_RS07235	0.52	+1.0
1,325,005	+		MMJJ_RS07235	0.52	+1.1
1,325,031	-		MMJJ_RS07235	0.54	+1.6
1,325,038	+		MMJJ_RS07235	0.54	+0.1
1,325,048	-		MMJJ_RS07235	0.55	+3.7
1,325,049	+		MMJJ_RS07235	0.55	+2.5
1,325,049	+		MMJJ_RS07235	0.55	+1.7
1,325,049	+		MMJJ_RS07235	0.55	+2.4
1,325,063	+		MMJJ_RS07235	0.56	+1.7
1,325,070	+		MMJJ_RS07235	0.57	+2.4
1,325,077	-		MMJJ_RS07235	0.57	+2.0
1,325,077	-		MMJJ_RS07235	0.57	+1.2
1,325,077	-		MMJJ_RS07235	0.57	-0.0
1,325,078	+		MMJJ_RS07235	0.58	+2.3
1,325,078	+		MMJJ_RS07235	0.58	+0.2
1,325,078	+				+2.7
1,325,078	+		MMJJ_RS07235	0.58	+2.6
1,325,080	-		MMJJ_RS07235	0.58	+3.6
1,325,166	+		MMJJ_RS07235	0.65	+4.5
1,325,172	-		MMJJ_RS07235	0.65	-1.9
1,325,172	-		MMJJ_RS07235	0.65	+1.4
1,325,172	-		MMJJ_RS07235	0.65	+1.6
1,325,173	+		MMJJ_RS07235	0.65	+0.3
1,325,229	-		MMJJ_RS07235	0.70	+3.4
1,325,266	+		MMJJ_RS07235	0.73	+2.7
1,325,266	+		MMJJ_RS07235	0.73	+0.9
1,325,283	-		MMJJ_RS07235	0.74	+2.2
1,325,283	-		MMJJ_RS07235	0.74	+2.9
1,325,303	-		MMJJ_RS07235	0.76	+1.7
1,325,303	-		MMJJ_RS07235	0.76	+0.1
1,325,304	+		MMJJ_RS07235	0.76	+1.1
1,325,304	+		MMJJ_RS07235	0.76	+0.6
1,325,316	-		MMJJ_RS07235	0.77	+0.2
1,325,336	-		MMJJ_RS07235	0.78	+2.9
1,325,363	-		MMJJ_RS07235	0.80	+1.9
1,325,412	-		MMJJ_RS07235	0.84	+4.0
1,325,412	-		MMJJ_RS07235	0.84	+3.2
1,325,412	-		MMJJ_RS07235	0.84	+1.7
1,325,412	-		MMJJ_RS07235	0.84	+1.6
1,325,413	+		MMJJ_RS07235	0.84	+2.9
1,325,413	+		MMJJ_RS07235	0.84	+1.5
1,325,413	+		MMJJ_RS07235	0.84	+1.1
1,325,414	-		MMJJ_RS07235	0.84	+1.9
1,325,414	-		MMJJ_RS07235	0.84	+0.2
1,325,414	-		MMJJ_RS07235	0.84	+4.2
1,325,415	+		MMJJ_RS07235	0.85	+3.2
1,325,415	+		MMJJ_RS07235	0.85	+0.7
1,325,415	+		MMJJ_RS07235	0.85	+2.8
1,325,415	+		MMJJ_RS07235	0.85	+2.3
1,325,439	+		MMJJ_RS07235	0.87	+1.7
1,325,439	+		MMJJ_RS07235	0.87	+2.9
1,325,498	-				+3.1
1,325,498	-				+2.5
1,325,520	-				+2.1
1,325,520	-				+1.5
1,325,520	-				+1.7
1,325,520	-				-2.0
1,325,520	-				+1.4
1,325,521	+				+1.2
1,325,538	-				+1.2
1,325,551	+				+2.2
1,325,556	+				-0.9
1,325,556	+				+1.9
1,325,573	-				+1.7
1,325,573	-				+1.8
1,325,579	-				+1.6
1,325,580	+				+2.0
1,325,592	-				+2.1
1,325,609	-				+2.1
1,325,629	+				+0.8
1,325,634	-				+0.6
1,325,635	+				+2.0
1,325,635	+				+1.8
1,325,662	-				+2.2
1,325,663	+				+2.4
1,325,673	+				+2.0
1,325,703	+				+2.3
1,325,703	+				+1.5
1,325,711	+				+0.1
1,325,752	-				+2.7
1,325,758	+				+1.8
1,325,769	-				+0.2
1,325,812	+				+0.4
1,325,812	+				+0.1
1,325,852	-				-0.2
1,325,917	-				-0.4
1,325,918	+				-3.8
1,325,918	+				-0.6
1,325,935	+				-1.1
1,325,945	-				-2.9
1,325,945	-				-2.7
1,325,946	+				-0.5
1,325,970	+		MMJJ_RS07240	0.12	+0.7
1,325,970	+		MMJJ_RS07240	0.12	-1.1
1,325,975	-		MMJJ_RS07240	0.12	-3.1
1,325,976	+		MMJJ_RS07240	0.12	-2.9
1,325,990	+		MMJJ_RS07240	0.13	-1.3
1,325,990	+		MMJJ_RS07240	0.13	-1.1
1,326,125	-		MMJJ_RS07240	0.24	+0.2
1,326,125	-		MMJJ_RS07240	0.24	-2.6
1,326,126	+		MMJJ_RS07240	0.24	+1.0
1,326,126	+		MMJJ_RS07240	0.24	+2.2
1,326,126	+		MMJJ_RS07240	0.24	-3.5
1,326,131	-		MMJJ_RS07240	0.24	+0.5
1,326,160	-		MMJJ_RS07240	0.27	-3.9
1,326,161	+		MMJJ_RS07240	0.27	+0.6
1,326,169	+		MMJJ_RS07240	0.27	+0.9
1,326,204	+		MMJJ_RS07240	0.30	+1.5
1,326,209	-		MMJJ_RS07240	0.30	-0.9
1,326,209	-		MMJJ_RS07240	0.30	-0.3
1,326,209	-		MMJJ_RS07240	0.30	+1.7
1,326,209	-		MMJJ_RS07240	0.30	-2.4
1,326,210	+		MMJJ_RS07240	0.30	-3.1
1,326,210	+		MMJJ_RS07240	0.30	-1.5
1,326,210	+		MMJJ_RS07240	0.30	+1.5
1,326,247	+		MMJJ_RS07240	0.33	-3.1
1,326,247	+		MMJJ_RS07240	0.33	-3.1
1,326,325	-		MMJJ_RS07240	0.40	-3.3
1,326,325	-		MMJJ_RS07240	0.40	+0.2
1,326,325	-		MMJJ_RS07240	0.40	+0.7
1,326,325	-		MMJJ_RS07240	0.40	-0.7
1,326,326	+		MMJJ_RS07240	0.40	-3.7
1,326,326	+		MMJJ_RS07240	0.40	-1.2
1,326,326	+		MMJJ_RS07240	0.40	-1.7
1,326,326	+		MMJJ_RS07240	0.40	-2.8
1,326,361	-		MMJJ_RS07240	0.42	-1.8
1,326,379	+		MMJJ_RS07240	0.44	-3.7
1,326,397	-		MMJJ_RS07240	0.45	-2.5
1,326,397	-		MMJJ_RS07240	0.45	+0.0
1,326,397	-		MMJJ_RS07240	0.45	-3.4
1,326,397	-		MMJJ_RS07240	0.45	-1.5
1,326,397	-		MMJJ_RS07240	0.45	+1.6
1,326,397	-		MMJJ_RS07240	0.45	-0.6
1,326,398	+		MMJJ_RS07240	0.45	+2.1
1,326,398	+		MMJJ_RS07240	0.45	-1.7
1,326,398	+		MMJJ_RS07240	0.45	-3.0
1,326,398	+		MMJJ_RS07240	0.45	-2.1
1,326,402	+		MMJJ_RS07240	0.46	-3.8
1,326,402	+		MMJJ_RS07240	0.46	-4.6
1,326,453	+		MMJJ_RS07240	0.50	-3.0
1,326,531	-		MMJJ_RS07240	0.56	-1.1
1,326,531	-		MMJJ_RS07240	0.56	-0.4
1,326,531	-		MMJJ_RS07240	0.56	+2.2
1,326,532	+		MMJJ_RS07240	0.56	+0.2
1,326,532	+		MMJJ_RS07240	0.56	-2.1
1,326,532	+		MMJJ_RS07240	0.56	-1.3
1,326,533	-		MMJJ_RS07240	0.56	-3.5
1,326,533	-		MMJJ_RS07240	0.56	-3.6
1,326,534	+		MMJJ_RS07240	0.56	+0.3
1,326,534	+		MMJJ_RS07240	0.56	-1.8
1,326,537	-		MMJJ_RS07240	0.56	-1.6
1,326,537	-		MMJJ_RS07240	0.56	+0.6
1,326,538	+		MMJJ_RS07240	0.56	-3.2
1,326,538	+		MMJJ_RS07240	0.56	+1.1
1,326,538	+		MMJJ_RS07240	0.56	+0.1
1,326,538	+		MMJJ_RS07240	0.56	+0.1
1,326,551	+		MMJJ_RS07240	0.57	-3.9
1,326,567	-		MMJJ_RS07240	0.59	-2.3
1,326,568	+		MMJJ_RS07240	0.59	-0.7
1,326,568	+		MMJJ_RS07240	0.59	+3.3