Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07225

Experiment: H2 McCas, 5g/L bicarb, 40 psi H2CO2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 5g/L bicarb, 40 psi H2CO2
1,322,048	-				+0.1
1,322,049	+				+1.6
1,322,068	-				+1.1
1,322,069	+				+0.1
1,322,097	-				-0.6
1,322,098	+				+3.3
1,322,098	+				-0.2
1,322,099	-				-1.5
1,322,099	-				-1.4
1,322,101	-				+2.4
1,322,101	-				+1.3
1,322,101	-				+3.2
1,322,101	-				-2.7
1,322,101	-				+0.3
1,322,101	-				-3.4
1,322,101	-				+1.2
1,322,102	+				+1.2
1,322,102	+				-2.0
1,322,102	+				+0.2
1,322,102	+				-1.0
1,322,102	+				+0.3
1,322,102	+				+1.8
1,322,102	+				-0.7
1,322,104	-				-1.6
1,322,105	+				+0.0
1,322,105	+				+1.1
1,322,105	+				+0.6
1,322,105	+				-0.0
1,322,106	-				+0.0
1,322,125	-				+1.4
1,322,125	-				+1.1
1,322,126	+				+1.0
1,322,135	+				+3.0
1,322,145	+				+1.0
1,322,157	-				-2.0
1,322,313	-		MMJJ_RS07220	0.19	+0.8
1,322,313	-		MMJJ_RS07220	0.19	+2.9
1,322,404	-		MMJJ_RS07220	0.30	-0.2
1,322,405	+		MMJJ_RS07220	0.30	+2.3
1,322,406	-		MMJJ_RS07220	0.30	+1.4
1,322,413	-		MMJJ_RS07220	0.31	-0.0
1,322,413	-		MMJJ_RS07220	0.31	+1.7
1,322,414	+		MMJJ_RS07220	0.31	-0.2
1,322,414	+		MMJJ_RS07220	0.31	+1.1
1,322,414	+		MMJJ_RS07220	0.31	+1.1
1,322,417	-		MMJJ_RS07220	0.31	+0.8
1,322,417	-		MMJJ_RS07220	0.31	+2.5
1,322,417	-		MMJJ_RS07220	0.31	+1.8
1,322,417	-		MMJJ_RS07220	0.31	+2.1
1,322,417	-		MMJJ_RS07220	0.31	+1.4
1,322,417	-		MMJJ_RS07220	0.31	+2.5
1,322,417	-		MMJJ_RS07220	0.31	+2.3
1,322,418	+		MMJJ_RS07220	0.31	+2.4
1,322,418	+		MMJJ_RS07220	0.31	+1.7
1,322,418	+		MMJJ_RS07220	0.31	+1.9
1,322,418	+		MMJJ_RS07220	0.31	-0.1
1,322,418	+		MMJJ_RS07220	0.31	+1.8
1,322,440	+		MMJJ_RS07220	0.34	+1.8
1,322,490	-		MMJJ_RS07220	0.40	+1.1
1,322,490	-		MMJJ_RS07220	0.40	+2.0
1,322,575	-		MMJJ_RS07220	0.50	+1.8
1,322,581	-		MMJJ_RS07220	0.50	+1.4
1,322,582	+		MMJJ_RS07220	0.51	+1.8
1,322,582	+		MMJJ_RS07220	0.51	+1.8
1,322,582	+		MMJJ_RS07220	0.51	+0.3
1,322,582	+		MMJJ_RS07220	0.51	+0.4
1,322,583	-		MMJJ_RS07220	0.51	+1.5
1,322,583	-		MMJJ_RS07220	0.51	+1.2
1,322,583	-		MMJJ_RS07220	0.51	+3.7
1,322,583	-		MMJJ_RS07220	0.51	+1.7
1,322,584	+		MMJJ_RS07220	0.51	+2.1
1,322,584	+		MMJJ_RS07220	0.51	+1.6
1,322,606	-		MMJJ_RS07220	0.53	+1.0
1,322,606	-		MMJJ_RS07220	0.53	+1.2
1,322,606	-		MMJJ_RS07220	0.53	+1.0
1,322,607	+		MMJJ_RS07220	0.53	+2.9
1,322,607	+		MMJJ_RS07220	0.53	+0.3
1,322,608	-		MMJJ_RS07220	0.54	+1.1
1,322,608	-		MMJJ_RS07220	0.54	+0.8
1,322,615	+		MMJJ_RS07220	0.54	+1.0
1,322,619	+		MMJJ_RS07220	0.55	+2.2
1,322,658	-		MMJJ_RS07220	0.59	+2.2
1,322,658	-		MMJJ_RS07220	0.59	+2.0
1,322,683	-		MMJJ_RS07220	0.62	+1.8
1,322,735	-		MMJJ_RS07220	0.69	+0.1
1,322,736	+		MMJJ_RS07220	0.69	+0.2
1,322,747	-		MMJJ_RS07220	0.70	+1.2
1,322,762	+		MMJJ_RS07220	0.72	+2.1
1,322,768	-		MMJJ_RS07220	0.72	+2.2
1,322,768	-		MMJJ_RS07220	0.72	+0.8
1,322,768	-		MMJJ_RS07220	0.72	+3.5
1,322,769	+		MMJJ_RS07220	0.73	+2.3
1,322,769	+		MMJJ_RS07220	0.73	+1.8
1,322,773	-		MMJJ_RS07220	0.73	+1.6
1,322,774	+		MMJJ_RS07220	0.73	+1.3
1,322,775	-		MMJJ_RS07220	0.73	+1.9
1,322,776	+		MMJJ_RS07220	0.73	-2.8
1,322,779	-		MMJJ_RS07220	0.74	+1.6
1,322,815	-		MMJJ_RS07220	0.78	+1.8
1,322,864	-		MMJJ_RS07220	0.84	+1.3
1,322,865	+		MMJJ_RS07220	0.84	-0.0
1,322,902	+		MMJJ_RS07220	0.88	+0.8
1,322,979	+				+1.7
1,322,979	+				+1.3
1,322,980	-				+5.0
1,322,983	+				+2.3
1,323,003	-				+3.4
1,323,004	+				+3.5
1,323,004	+				+2.5
1,323,004	+				+1.6
1,323,004	+				+2.0
1,323,017	-				+0.5
1,323,027	+				+1.9
1,323,037	+				+1.9
1,323,053	-				+4.1
1,323,053	-				+2.4
1,323,145	-		MMJJ_RS07225	0.16	+2.5
1,323,145	-		MMJJ_RS07225	0.16	+1.1
1,323,146	+		MMJJ_RS07225	0.16	+1.4
1,323,149	-		MMJJ_RS07225	0.17	+1.2
1,323,149	-		MMJJ_RS07225	0.17	+2.1
1,323,150	+		MMJJ_RS07225	0.17	+0.9
1,323,150	+		MMJJ_RS07225	0.17	+3.3
1,323,150	+		MMJJ_RS07225	0.17	+3.2
1,323,160	-		MMJJ_RS07225	0.18	+0.8
1,323,194	+		MMJJ_RS07225	0.23	+0.5
1,323,213	+		MMJJ_RS07225	0.26	+0.7
1,323,218	-		MMJJ_RS07225	0.27	+0.3
1,323,278	-		MMJJ_RS07225	0.35	+1.6
1,323,279	+		MMJJ_RS07225	0.36	+2.2
1,323,279	+		MMJJ_RS07225	0.36	+1.5
1,323,283	+		MMJJ_RS07225	0.36	+2.0
1,323,323	-		MMJJ_RS07225	0.42	+1.8
1,323,442	-		MMJJ_RS07225	0.59	+2.8
1,323,442	-		MMJJ_RS07225	0.59	+2.7
1,323,479	-		MMJJ_RS07225	0.65	-0.6
1,323,480	+		MMJJ_RS07225	0.65	+4.0
1,323,548	+		MMJJ_RS07225	0.75	+3.2
1,323,548	+		MMJJ_RS07225	0.75	+0.7
1,323,563	-		MMJJ_RS07225	0.77	+1.9
1,323,563	-		MMJJ_RS07225	0.77	+2.1
1,323,563	-		MMJJ_RS07225	0.77	+2.9
1,323,564	+		MMJJ_RS07225	0.77	+0.5
1,323,564	+		MMJJ_RS07225	0.77	+1.6
1,323,569	-		MMJJ_RS07225	0.78	+1.4
1,323,570	+		MMJJ_RS07225	0.78	+2.0
1,323,617	-		MMJJ_RS07225	0.85	+1.5
1,323,623	-		MMJJ_RS07225	0.86	+1.3
1,323,624	+		MMJJ_RS07225	0.86	+1.5
1,323,641	-		MMJJ_RS07225	0.88	+0.6
1,323,642	+		MMJJ_RS07225	0.88	+0.9
1,323,674	-				+1.1
1,323,695	-				+1.2
1,323,695	-				+1.6
1,323,695	-				+3.7
1,323,696	+				+3.3
1,323,725	+				+3.2
1,323,737	-				+2.3
1,323,738	+				+1.0
1,323,824	+		MMJJ_RS07230	0.17	+1.6
1,323,824	+		MMJJ_RS07230	0.17	+0.4
1,323,826	-		MMJJ_RS07230	0.17	-0.2
1,323,826	-		MMJJ_RS07230	0.17	+2.2
1,323,845	-		MMJJ_RS07230	0.21	+3.3
1,323,845	-		MMJJ_RS07230	0.21	+1.4
1,323,846	+		MMJJ_RS07230	0.21	+0.6
1,323,871	+		MMJJ_RS07230	0.26	+0.5
1,323,898	+		MMJJ_RS07230	0.31	+0.4
1,323,901	-		MMJJ_RS07230	0.31	-0.9
1,323,902	+		MMJJ_RS07230	0.32	-0.4
1,323,909	+		MMJJ_RS07230	0.33	+3.9
1,323,909	+		MMJJ_RS07230	0.33	+2.4
1,323,909	+		MMJJ_RS07230	0.33	-0.9
1,323,915	-		MMJJ_RS07230	0.34	+3.2
1,323,981	-		MMJJ_RS07230	0.47	+1.3
1,323,981	-		MMJJ_RS07230	0.47	+1.6
1,323,981	-		MMJJ_RS07230	0.47	+1.4
1,323,982	+		MMJJ_RS07230	0.47	+1.5
1,323,982	+		MMJJ_RS07230	0.47	+1.5
1,323,982	+		MMJJ_RS07230	0.47	+1.5
1,323,986	+		MMJJ_RS07230	0.48	+4.7
1,323,990	-		MMJJ_RS07230	0.48	+2.1
1,323,991	+		MMJJ_RS07230	0.49	+0.2
1,324,033	-		MMJJ_RS07230	0.57	+2.1
1,324,141	-		MMJJ_RS07230	0.77	+1.0
1,324,173	-		MMJJ_RS07230	0.83	+1.7
1,324,174	+		MMJJ_RS07230	0.83	+1.3
1,324,197	-		MMJJ_RS07230	0.88	+1.2
1,324,219	+				+2.1
1,324,228	-				-1.0
1,324,236	+				+1.5
1,324,253	-				+2.6
1,324,287	+				+1.8
1,324,287	+				+0.6
1,324,298	+				+1.0
1,324,302	-				+2.9
1,324,327	+				+0.3
1,324,374	-				+1.0
1,324,422	+				+1.4
1,324,437	-				+1.6
1,324,438	+				+1.7
1,324,438	+				+0.5
1,324,444	-				+2.0
1,324,444	-				+1.3
1,324,454	-				+1.0
1,324,455	+				+3.0
1,324,469	+				+1.4
1,324,469	+				+1.0
1,324,473	+				+1.2
1,324,473	+				+1.6
1,324,473	+				-1.1
1,324,473	+				+1.6
1,324,540	-		MMJJ_RS07235	0.14	+1.1
1,324,540	-		MMJJ_RS07235	0.14	+3.5
1,324,541	+		MMJJ_RS07235	0.14	+2.5
1,324,639	-		MMJJ_RS07235	0.22	+3.9
1,324,639	-		MMJJ_RS07235	0.22	+1.4
1,324,639	-		MMJJ_RS07235	0.22	+0.5
1,324,646	-		MMJJ_RS07235	0.23	+1.5
1,324,647	+		MMJJ_RS07235	0.23	+1.3
1,324,647	+		MMJJ_RS07235	0.23	+2.2
1,324,647	+		MMJJ_RS07235	0.23	+1.7
1,324,650	-		MMJJ_RS07235	0.23	+1.6
1,324,650	-		MMJJ_RS07235	0.23	+2.7
1,324,651	+		MMJJ_RS07235	0.23	+2.2
1,324,659	-		MMJJ_RS07235	0.24	+1.3
1,324,659	-				+1.7
1,324,689	+		MMJJ_RS07235	0.26	+2.1