Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05680

Experiment: H2 McCas, 5g/L bicarb, 40 psi H2CO2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 5g/L bicarb, 40 psi H2CO2
1,057,896	-				+3.0
1,057,897	+				+0.1
1,057,898	-				+3.1
1,057,899	+				+3.8
1,057,914	-				+1.7
1,057,915	+				+3.9
1,057,943	-		MMJJ_RS05675	0.13	+3.1
1,057,943	-		MMJJ_RS05675	0.13	+2.6
1,057,943	-		MMJJ_RS05675	0.13	+2.1
1,058,059	-		MMJJ_RS05675	0.24	+2.3
1,058,060	+		MMJJ_RS05675	0.24	+2.2
1,058,066	-		MMJJ_RS05675	0.25	+1.8
1,058,066	-		MMJJ_RS05675	0.25	+2.0
1,058,079	-		MMJJ_RS05675	0.26	+1.7
1,058,079	-		MMJJ_RS05675	0.26	+3.6
1,058,080	+		MMJJ_RS05675	0.26	+3.3
1,058,117	-		MMJJ_RS05675	0.30	+1.2
1,058,127	-		MMJJ_RS05675	0.31	+2.4
1,058,128	+		MMJJ_RS05675	0.31	+3.1
1,058,128	+		MMJJ_RS05675	0.31	+2.7
1,058,128	+		MMJJ_RS05675	0.31	+2.7
1,058,134	-		MMJJ_RS05675	0.32	+3.2
1,058,134	-		MMJJ_RS05675	0.32	+2.6
1,058,149	+		MMJJ_RS05675	0.33	+3.2
1,058,195	-		MMJJ_RS05675	0.38	+3.7
1,058,195	-		MMJJ_RS05675	0.38	+2.9
1,058,195	-		MMJJ_RS05675	0.38	+2.5
1,058,198	+		MMJJ_RS05675	0.38	+2.2
1,058,208	-		MMJJ_RS05675	0.39	+2.8
1,058,252	-		MMJJ_RS05675	0.44	+3.0
1,058,255	-		MMJJ_RS05675	0.44	+3.5
1,058,306	-		MMJJ_RS05675	0.49	+2.3
1,058,329	-		MMJJ_RS05675	0.51	+0.1
1,058,330	+		MMJJ_RS05675	0.51	+3.3
1,058,330	+		MMJJ_RS05675	0.51	+2.8
1,058,330	+		MMJJ_RS05675	0.51	+3.8
1,058,330	+		MMJJ_RS05675	0.51	+2.9
1,058,354	-		MMJJ_RS05675	0.54	+2.2
1,058,355	+		MMJJ_RS05675	0.54	+3.3
1,058,358	-		MMJJ_RS05675	0.54	+3.6
1,058,363	-		MMJJ_RS05675	0.55	+2.4
1,058,364	+		MMJJ_RS05675	0.55	+4.3
1,058,468	-		MMJJ_RS05675	0.65	+3.5
1,058,469	+		MMJJ_RS05675	0.65	+3.7
1,058,504	-		MMJJ_RS05675	0.69	+2.8
1,058,504	-		MMJJ_RS05675	0.69	+2.6
1,058,532	-		MMJJ_RS05675	0.72	+2.0
1,058,532	-		MMJJ_RS05675	0.72	+1.5
1,058,532	-		MMJJ_RS05675	0.72	+2.7
1,058,532	-		MMJJ_RS05675	0.72	+2.5
1,058,532	-		MMJJ_RS05675	0.72	+2.9
1,058,533	+		MMJJ_RS05675	0.72	+3.1
1,058,533	+		MMJJ_RS05675	0.72	+3.1
1,058,533	+		MMJJ_RS05675	0.72	+4.7
1,058,533	+		MMJJ_RS05675	0.72	+3.1
1,058,533	+		MMJJ_RS05675	0.72	+2.0
1,058,536	-		MMJJ_RS05675	0.72	+4.8
1,058,536	-		MMJJ_RS05675	0.72	+2.8
1,058,536	-		MMJJ_RS05675	0.72	+0.8
1,058,650	+		MMJJ_RS05675	0.83	+3.1
1,058,655	-		MMJJ_RS05675	0.84	+2.8
1,058,656	+		MMJJ_RS05675	0.84	+3.5
1,058,733	-				+2.9
1,058,733	-				+2.9
1,058,734	+				+2.2
1,058,745	-				+2.4
1,058,746	+				+3.7
1,058,746	+				+3.0
1,058,753	-				+3.0
1,058,754	+				+2.8
1,058,754	+				+3.7
1,058,754	+				-2.9
1,058,758	-				+1.0
1,058,758	-				+2.9
1,058,759	+				+2.6
1,058,777	-				+2.4
1,058,777	-				+2.8
1,058,777	-				+2.5
1,058,777	-				+2.1
1,058,777	-				+3.3
1,058,778	+				+2.5
1,058,778	+				+3.0
1,058,780	+				+2.4
1,058,780	+				+2.8
1,058,808	-				+3.0
1,058,808	-				+0.4
1,058,808	-				+2.9
1,058,808	-				+2.1
1,058,857	-		MMJJ_RS05680	0.12	-0.3
1,058,882	+		MMJJ_RS05680	0.24	+1.8
1,058,906	-		MMJJ_RS05680	0.36	+3.6
1,058,907	+		MMJJ_RS05680	0.37	+3.4
1,058,907	+		MMJJ_RS05680	0.37	+3.2
1,058,911	-		MMJJ_RS05680	0.39	+2.4
1,058,936	-		MMJJ_RS05680	0.52	+1.4
1,058,936	-		MMJJ_RS05680	0.52	+3.7
1,058,937	+		MMJJ_RS05680	0.52	+2.9
1,058,937	+		MMJJ_RS05680	0.52	+2.8
1,058,950	-		MMJJ_RS05680	0.59	+3.7
1,058,950	-		MMJJ_RS05680	0.59	+3.1
1,058,951	+		MMJJ_RS05680	0.59	+3.3
1,058,951	+		MMJJ_RS05680	0.59	+2.7
1,058,951	+		MMJJ_RS05680	0.59	+1.9
1,058,953	-		MMJJ_RS05680	0.60	+3.0
1,058,953	-		MMJJ_RS05680	0.60	+3.1
1,058,953	-		MMJJ_RS05680	0.60	+3.4
1,058,953	-		MMJJ_RS05680	0.60	+2.0
1,058,953	-		MMJJ_RS05680	0.60	+3.9
1,058,953	-		MMJJ_RS05680	0.60	+4.0
1,058,953	-		MMJJ_RS05680	0.60	+4.4
1,058,953	-		MMJJ_RS05680	0.60	+3.5
1,058,953	-		MMJJ_RS05680	0.60	+1.8
1,058,953	-		MMJJ_RS05680	0.60	+4.8
1,058,953	-		MMJJ_RS05680	0.60	+2.2
1,058,953	-		MMJJ_RS05680	0.60	+3.0
1,058,954	+		MMJJ_RS05680	0.61	+2.9
1,058,954	+		MMJJ_RS05680	0.61	+3.3
1,058,954	+		MMJJ_RS05680	0.61	+3.8
1,058,954	+		MMJJ_RS05680	0.61	+2.7
1,058,954	+		MMJJ_RS05680	0.61	+3.4
1,058,954	+		MMJJ_RS05680	0.61	+3.0
1,058,954	+		MMJJ_RS05680	0.61	+3.6
1,058,954	+		MMJJ_RS05680	0.61	+3.2
1,058,954	+		MMJJ_RS05680	0.61	+3.2
1,058,955	-		MMJJ_RS05680	0.61	+3.6
1,058,955	-		MMJJ_RS05680	0.61	+2.3
1,058,955	-		MMJJ_RS05680	0.61	+1.7
1,058,956	+		MMJJ_RS05680	0.62	+3.2
1,058,956	+		MMJJ_RS05680	0.62	+2.9
1,058,956	+		MMJJ_RS05680	0.62	+3.6
1,058,965	-		MMJJ_RS05680	0.66	+3.9
1,058,965	-		MMJJ_RS05680	0.66	-1.0
1,058,966	+		MMJJ_RS05680	0.67	+4.7
1,058,969	-		MMJJ_RS05680	0.68	+2.8
1,058,969	-		MMJJ_RS05680	0.68	+1.4
1,058,969	-		MMJJ_RS05680	0.68	+2.8
1,058,969	-		MMJJ_RS05680	0.68	+3.5
1,058,969	-		MMJJ_RS05680	0.68	+2.5
1,058,969	-		MMJJ_RS05680	0.68	+3.2
1,058,970	+		MMJJ_RS05680	0.69	+3.9
1,058,970	+		MMJJ_RS05680	0.69	+3.1
1,058,970	+		MMJJ_RS05680	0.69	+2.2
1,058,970	+		MMJJ_RS05680	0.69	+2.9
1,058,970	+		MMJJ_RS05680	0.69	+3.3
1,058,970	+		MMJJ_RS05680	0.69	+2.7
1,058,970	+		MMJJ_RS05680	0.69	+3.1
1,058,970	+		MMJJ_RS05680	0.69	+3.7
1,058,970	+		MMJJ_RS05680	0.69	+3.5
1,058,970	+		MMJJ_RS05680	0.69	+3.2
1,058,970	+		MMJJ_RS05680	0.69	+3.7
1,058,970	+		MMJJ_RS05680	0.69	+4.2
1,058,970	+		MMJJ_RS05680	0.69	-0.7
1,058,970	+		MMJJ_RS05680	0.69	+2.6
1,058,971	-		MMJJ_RS05680	0.69	+1.5
1,058,971	-		MMJJ_RS05680	0.69	+1.6
1,058,971	-		MMJJ_RS05680	0.69	+1.9
1,058,972	+		MMJJ_RS05680	0.70	+3.3
1,058,972	+		MMJJ_RS05680	0.70	+3.7
1,058,972	+		MMJJ_RS05680	0.70	+4.0
1,058,972	+		MMJJ_RS05680	0.70	+3.2
1,058,972	+		MMJJ_RS05680	0.70	+3.4
1,058,973	-		MMJJ_RS05680	0.70	-0.6
1,058,973	-		MMJJ_RS05680	0.70	-0.5
1,058,973	-		MMJJ_RS05680	0.70	+2.0
1,058,974	+		MMJJ_RS05680	0.71	+0.6
1,058,974	+		MMJJ_RS05680	0.71	+1.2
1,058,974	+		MMJJ_RS05680	0.71	-0.2
1,058,974	+		MMJJ_RS05680	0.71	-0.4
1,058,978	-		MMJJ_RS05680	0.73	-2.9
1,058,978	-		MMJJ_RS05680	0.73	+0.2
1,058,978	-		MMJJ_RS05680	0.73	-0.5
1,058,978	-		MMJJ_RS05680	0.73	-1.6
1,058,978	-		MMJJ_RS05680	0.73	-2.7
1,058,979	+		MMJJ_RS05680	0.73	-2.8
1,058,979	+		MMJJ_RS05680	0.73	+1.1
1,058,979	+		MMJJ_RS05680	0.73	-3.8
1,058,979	+		MMJJ_RS05680	0.73	-0.6
1,058,979	+		MMJJ_RS05680	0.73	-0.7
1,058,981	-		MMJJ_RS05680	0.74	+1.3
1,058,982	+		MMJJ_RS05680	0.75	-3.9
1,058,982	+		MMJJ_RS05680	0.75	-1.9
1,058,983	-		MMJJ_RS05680	0.75	+0.5
1,058,984	+		MMJJ_RS05680	0.76	-0.6
1,059,008	-		MMJJ_RS05680	0.88	-1.2
1,059,008	-		MMJJ_RS05680	0.88	+1.1
1,059,031	-				+2.7
1,059,032	+				+0.4
1,059,352	-				+1.6
1,059,352	-				+1.4
1,059,352	-				+1.6
1,059,352	-				-0.8
1,059,352	-				+0.8
1,059,353	+				-1.0
1,059,353	+				-1.4
1,059,353	+				-0.1
1,059,353	+				+1.2
1,059,353	+				+0.5
1,059,353	+				-0.9
1,059,353	+				-3.1
1,059,353	+				+1.9
1,059,353	+				-0.9
1,059,355	+				-2.7
1,059,356	-				+2.4
1,059,356	-				+0.2
1,059,357	+				+1.8
1,059,357	+				+0.6
1,059,364	-				+0.0
1,059,364	-				+0.1
1,059,376	-				-0.4
1,059,384	-				+1.3
1,059,388	-				+0.7
1,059,389	+				-0.5
1,059,389	+				-2.5
1,059,390	-				+1.8
1,059,390	-				-0.1
1,059,390	-				+3.2
1,059,390	-				-2.3
1,059,391	+				+1.7
1,059,391	+				+1.0
1,059,391	+				-2.3
1,059,391	+				+0.9
1,059,391	+				+0.7
1,059,391	+				+0.6
1,059,392	-				+0.5
1,059,392	-				+1.0
1,059,393	+				-1.9
1,059,393	+				+0.1
1,059,393	+				-0.8
1,059,393	+				+0.5
1,059,393	+				-0.1
1,059,394	-				+1.0
1,059,394	-				-2.1
1,059,394	-				+0.5
1,059,395	+				-2.3
1,059,395	+				-0.6
1,059,401	-				-0.9
1,059,402	+				+2.4
1,059,424	-				+1.5
1,059,424	-				-5.1
1,059,424	-				+0.8
1,059,424	-				+0.7
1,059,425	+				-0.7
1,059,425	+				+0.7
1,059,426	-				+1.0
1,059,426	-				+2.6
1,059,444	-				-4.6
1,059,444	-				-0.9
1,059,467	+				-0.2
1,059,487	-		MMJJ_RS05685	0.17	+0.7
1,059,504	+		MMJJ_RS05685	0.25	-2.5
1,059,546	-		MMJJ_RS05685	0.43	-1.0
1,059,546	-		MMJJ_RS05685	0.43	+0.3
1,059,546	-		MMJJ_RS05685	0.43	+0.1
1,059,546	-		MMJJ_RS05685	0.43	-1.1
1,059,546	-		MMJJ_RS05685	0.43	+0.2
1,059,547	+		MMJJ_RS05685	0.43	+0.3
1,059,547	+		MMJJ_RS05685	0.43	-0.1
1,059,552	-		MMJJ_RS05685	0.45	+0.6
1,059,585	+		MMJJ_RS05685	0.60	+0.3
1,059,614	-		MMJJ_RS05685	0.72	+0.8
1,059,620	+		MMJJ_RS05685	0.75	-2.2
1,059,620	+				-0.6
1,059,659	-				+1.8
1,059,659	-				+1.0
1,059,660	+				+0.3
1,059,663	+				-0.1
1,059,691	+				+0.9
1,059,713	-				+0.0
1,059,718	-				-0.1
1,059,728	-				+0.9
1,059,728	-				+0.7
1,059,729	+				+0.9
1,059,729	+				+0.1
1,059,734	-				+1.6
1,059,735	+				+1.1
1,059,743	-				+0.7
1,059,743	-				+0.3
1,059,745	-				+0.1
1,059,745	-				-1.4
1,059,745	-				-4.5
1,059,745	-				+0.2
1,059,745	-				-3.2
1,059,746	+				+0.7
1,059,746	+				-0.6
1,059,808	-				-0.5
1,059,809	+				+1.2
1,059,810	-				-2.5
1,059,811	+				+1.5
1,059,813	-				+0.7
1,059,813	-				-1.9
1,059,814	+				+1.6
1,059,814	+				+1.1
1,059,815	-				+2.3
1,059,815	-				+0.3
1,059,815	-				-3.3
1,059,816	+				-4.0
1,059,816	+				+1.1
1,059,826	-				+0.5
1,059,827	+				-0.4
1,059,827	+				-0.8
1,059,831	-				+1.0
1,059,831	-				-1.1
1,059,832	+				+0.9
1,059,865	-				-0.2
1,059,868	-				+1.0
1,059,868	-				-0.3
1,059,869	+				-0.3
1,059,869	+				-1.9
1,059,869	+				+2.2
1,059,870	-				+0.3
1,059,870	-				+0.6
1,059,870	-				-3.2
1,059,870	-				-3.1
1,059,870	-				+1.0
1,059,870	-				+1.4
1,059,871	+				-3.0
1,059,871	+				-0.3
1,059,871	+				-1.8
1,059,871	+				+1.5
1,059,930	+				+0.2
1,059,939	-				+0.7
1,059,959	-				-4.5
1,059,959	-				-1.6
1,059,959	-				-0.3
1,059,960	+				-2.0
1,059,960	+				+2.2
1,059,965	-				-1.0
1,059,966	+				+1.7
1,059,966	+				+0.1
1,059,994	-				+2.9
1,059,994	-				+0.0
1,059,995	+				+0.6
1,059,995	+				+1.5
1,059,996	-				-0.3
1,059,996	-				+1.2
1,059,996	-				+0.8
1,059,996	-				-1.9
1,059,996	-				+2.4
1,059,996	-				+0.3
1,059,997	+				-2.3
1,059,997	+				+0.0
1,059,998	-				-3.9
1,059,998	-				+1.2
1,059,999	+				+1.1
1,060,001	-				-2.4
1,060,001	-				+1.7
1,060,001	-				-1.2
1,060,023	-				+1.2
1,060,023	-				+0.1
1,060,024	+				-2.9